Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01055 ATGTACAATTTGATAGCAGTTTTTTTGTGCCGCAGGGGCTCCTCAAACCAAGACTCAGAACAAACATCACCGCGCCCCGTTACCGGAACTCCGAGTACCACCGAGAGTTCGGTGGCGCATTTGATTCCCGCCTACAAGTATCATAAAAAGTTGGACGTGGCAGATGAAGATGGCATTTGTGCTGTGTGCTTGGGAAGTTTTGAGGATGGTGaagacttgaaaattttaccgGAGTGCTTGCACTCTTTTCACGTATCATGCATAGATATGTGGCTCTATTCGCATTCAAATTGCCCAATTTGCCGGAACAATGTCACACATTCATTGGAGATTCCTTCTCATGAGCCGGATTTTAATTCCAATGAATCCAACAGACGGCAGAGCCTAGATATATTGTA 398 0.4347 MYNLIAVFLCRRGSSNQDSEQTSPRPVTGTPSTTESSVAHLIPAYKYHKKLDVADEDGICAVCLGSFEDGEDLKILPECLHSFHVSCIDMWLYSHSNCPICRNNVTHSLEIPSHEPDFNSNESNRRQSLDIL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01055 132 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 125 IPR044675 -
Bva08g01055 132 MobiDBLite consensus disorder prediction 113 132 - -
Bva08g01055 132 ProSiteProfiles Zinc finger RING-type profile. 60 102 IPR001841 -
Bva08g01055 132 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 2 125 - -
Bva08g01055 132 Pfam Ring finger domain 60 102 IPR001841 -
Bva08g01055 132 MobiDBLite consensus disorder prediction 15 35 - -
Bva08g01055 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 108 IPR013083 -
Bva08g01055 132 CDD RING-H2_PA-TM-RING 60 102 - -
Bva08g01055 132 SUPERFAMILY RING/U-box 53 111 - -
Bva08g01055 132 SMART ring_2 60 101 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01055 Bva-Chr8 5413586 5413984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01055 1 103 C3H Transcription Factor Family AT1G76410 42.453 4.41e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01055 - - aip:107639941 136.732