Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01054 ATGCCCAATGATGATCTCTTCGATGGTCAAGTAAGTTACATACTAATTGCTATGGGTTCAGCTGCAGTTATGGTCATGATGTTCCATCTTATTATGATTTGTTTGTCCAACCCAAGCATCACAAACCAAAACCCAGAACAAGCACAAAGGCTTCAGCTGCAGCATTTAGTTGCAGTAATAACACCGCCGGAAACGCCGAGACATTATGAGACTTCGGTGGCGCGTTTGATTCCGGCCCACAagtatgaaaagaagaaggaagtgATAAGTGAAGATGATACATGTTCAGTGTGCTTGGGAGTCTTTGAGGAGGGCGATGAGCTGCGGACTTTGCAGGAGTGCATGCACTCTTATCACGTACCATGCATAGATGCGTGGCTCTATTCGCATTCAAGTTGCCCTATTTGTCGTAAGCTTGCCACGCCTTCACCGGCGGTTCACCCTCGTGTGCCGGACTTTGGTTCCGGCGGCGGAGAAGCTAACAGACATCACGATTCAAGGATGTCGCAAAACAGTCCATA 521 0.4607 MPNDDLFDGQVSYILIAMGSAAVMVMMFHLIMICLSNPSITNQNPEQAQRLQLQHLVAVITPPETPRHYETSVARLIPAHKYEKKKEVISEDDTCSVCLGVFEEGDELRTLQECMHSYHVPCIDAWLYSHSSCPICRKLATPSPAVHPRVPDFGSGGGEANRHHDSRMSQNSP 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01054 173 SUPERFAMILY RING/U-box 84 144 - -
Bva08g01054 173 Pfam Ring finger domain 93 137 IPR001841 -
Bva08g01054 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 146 IPR044675 -
Bva08g01054 173 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 5 146 - -
Bva08g01054 173 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Bva08g01054 173 SMART ring_2 95 136 IPR001841 -
Bva08g01054 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 142 IPR013083 -
Bva08g01054 173 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01054 Bva-Chr8 5412370 5412891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01054 70 147 C3H Transcription Factor Family AT3G03550 46.154 8.18e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01054 - - lja:Lj0g3v0111029.1 150.214