Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01047 ATGGAAACCAACGACATATTAGAGGAGCTACTTAATGTGGAGGTTGAGATTCAAGATGTTGAAGaTCAAATAAAAGCGCTGATGGAAAGGCAGGAGAAGTTGTATGAGAAAAAATCCGATCTCCAGGCTATCCTGGAAGCATGTAAAGAATCTGAAAAACATGCCAATAATGGTGCTCCAAGTACTGTGGAAAATTGGTCTGGTCCATTTGAATGGGATTCTGAAGCAGATGACATCAGGCTGAATATTTTTGGCATTCCTACATACCGTGCAAATCAAAGAGAGATAATTAATGCAATCATGAGCAGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTATCAGCTTCCAGCTGTTCTTCGTGATGGAATTGCTCTTGTTGTCAGTCCCTTGCTTTCTTTAATTCAAGATCAGGTGATGGGTTTGTCTGCTTTAGGCATTCCAGCCTATATGTTGACATCAACAACAAGTAAGGAAGATGAGAAGTTCGTATACAAGGCTCTGGAGAAGGGTGAGGGGgaactcaaaatattatatgtcaCGCCAGAAAAGATATCAAAGAGCAAGAGATTTATGTCAAAGCTTGAAAAGTGCCATCATGCTGGTCGTCTCTCTCTGATCTCAATTGACGAAGCACATTGCTGTAGTCAATGGGGCCATGATTTTCGACCTGACTACAAGAACCTTGGTATTCTCAAGACTCAGTTCCCTAATGTTCCATTGGTTGCTTTGACTGCAACTGCTACTCAAAGGGTCCAAAATGATCTCATAGAGATGTTGCATATTCCAAGATGTGTCAAATTTGTAAGCACGGTCAACAGGCCAAACCTGTTTTATATGGTACGGGAAAAGTTATCTGTTGGCAAAGTGGTTATAGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAATGAATCCGGGATAGTTTATTGCTTCTCCAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTACGGGAGAGGGGAATTTTAGCTGATTATTATCATGCAGATATGGATGTAAATTCTCGGGAGAAAGTACATATGCGgTGGAGCAATAACAAATTGCAGGTGATAGTTTGTACAGTAGCATTTGGTATGGGAATCAACAAACCAGATGTGAGGTTTGTCATTCATCACAGCTTGAGTAAATCAATGGAAACATATTACCAGGAAAGTGGTCGAGCTGGTCGGGATGGACTCCCTTCTGAATGTTTACTGTACTATAGACCCGGTGATGTCCCTCGGCAGAGTTCAATGGTCTTCTACGAAAATTCAGGGCTGCAGAATCTCTATGATATAGTAAGATATTGTCAGTCCAAGAGACAATGCCGTCGAAGTGCCTTTTTCAGGCATTTTGCGGAGCCATTACAAGACTGCAATGGGATGTGTGACAATTGTGCATTCTCAAACGAGGTGAAGGAAGTAGACGTCTCTCGTCATGCAAAACTGATGGTTTCTTTGTTAAAAGATATACAAGAGAAAGATCAGAGGTTAACAATGTTGCAATTGGTcgacaaaatgaaaataaagcagAAAGAGCTAGGTTCTGACTTGAAAAAAGAGGAAACAGAGCAGCTCATCGTACAGCTTTTATTAGAGCGAGTTTTGAAAGAAGAATATCAGCATACAGCTTATGCTACAAATGCTTATGTAGCTGTAGGGCCATTAGCCATGCAAATATTGCAAGGGAAGAAAACTGTGAAGCTTGAGATTTCTAGCGATCAGAGAACTAAGGCAGGTGTAAGATCGGCCAAGCGTAGCCTTGGGTCATCTGGTTTGGAGCTAAAGCTTGATGAGCTGCGGAAAGAGTTGTCTGCCATTCATGGGGGAATACTCCCACATTCTGTTTTGTCTACTCAACAAATCAGCTTAATAAGTTCTGAAAAGCCAAATTCACTTGAACAGTTGGAAAAGATCATTGGAAAATTGAAGACGGAAAAGTATGGAAATAGAATACTTGAGCATGTTGAAAAGTATTCTGATTTTAAGCCGCCTGATGATACAAATGAACAAAGAACTGATGGTAGAGCTGCTAAGAAGTCGAGGACCAAGAAAGCTCTCGTTGTTATTGAGAGTAGTGAAGATGAAGCATG 2117 0.4025 METNDILEELLNVEVEIQDVEDQIKALMERQEKLYEKKSDLQAILEACKESEKHANNGAPSTVENWSGPFEWDSEADDIRLNIFGIPTYRANQREIINAIMSRRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLSALGIPAYMLTSTTSKEDEKFVYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVREKLSVGKVVIDEIAEFIQESYPNNESGIVYCFSRKECEQVAKELRERGILADYYHADMDVNSREKVHMRWSNNKLQVIVCTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQDCNGMCDNCAFSNEVKEVDVSRHAKLMVSLLKDIQEKDQRLTMLQLVDKMKIKQKELGSDLKKEETEQLIVQLLLERVLKEEYQHTAYATNAYVAVGPLAMQILQGKKTVKLEISSDQRTKAGVRSAKRSLGSSGLELKLDELRKELSAIHGGILPHSVLSTQQISLISSEKPNSLEQLEKIIGKLKTEKYGNRILEHVEKYSDFKPPDDTNEQRTDGRAAKKSRTKKALVVIESSEDEA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01047 705 MobiDBLite consensus disorder prediction 667 705 - -
Bva08g01047 705 SUPERFAMILY HRDC-like 604 669 IPR010997 GO:0000166|GO:0044237
Bva08g01047 705 Pfam HRDC domain 604 662 IPR002121 GO:0003676
Bva08g01047 705 Coils Coil 3 44 - -
Bva08g01047 705 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Bva08g01047 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Bva08g01047 705 Pfam RecQ zinc-binding 419 475 IPR032284 -
Bva08g01047 705 CDD SF2_C_RecQ 280 416 - -
Bva08g01047 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Bva08g01047 705 SMART helicmild6 326 407 IPR001650 -
Bva08g01047 705 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bva08g01047 705 SMART ultradead3 85 288 IPR014001 -
Bva08g01047 705 Pfam Helicase conserved C-terminal domain 303 406 IPR001650 -
Bva08g01047 705 Gene3D HRDC domain 599 668 IPR044876 -
Bva08g01047 705 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 681 - -
Bva08g01047 705 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Bva08g01047 705 Gene3D - 480 581 IPR036388 -
Bva08g01047 705 Gene3D - 44 279 IPR027417 -
Bva08g01047 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Bva08g01047 705 Pfam RQC domain 481 585 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bva08g01047 705 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 511 IPR004589 GO:0004386|GO:0006310
Bva08g01047 705 PANTHER ATP-DEPENDENT DNA HELICASE Q1 7 681 - -
Bva08g01047 705 CDD DEXHc_RecQ1 71 279 - -
Bva08g01047 705 Gene3D - 280 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01047 Bva-Chr8 5349639 5358731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01047 315 421 Eukaryotic Initiation Factors Gene Family AT3G19760 20.561 7.77e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01047 K10899 - gmx:100817635 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01047 08 5349639 5358731 Bva08g01047 08 5349639 5358731 ECH