Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01024 ATGGGATCCAATGGTAGCAAAGCCACTTCTTCTTGCGGTTCATCGTCTACATCGTCGTCTTCGGGTAGTTTTCGGAGGGGTCGATCTAAGGGGAGCAGAGGATTCCACTCCTACTGTCTGGGAACGACTTCTGGATCTCATGACAGTGATAATGACGACCAGGCCTGTGttcaaaataaagtaaatggTGGTAATGGCACATGCATCAATCGCCATGAAATAGACTCAGATGAGACGAAAACAGGGTCTTTTGGAAAGATTAAGTCCAAGAAATCGAGGCCTTGTATGCCTTCTAACATTGAACTTGATGAGTGGGGTCAAACAAGCATACACAATGCTGCGTCCCGAAGTGGTAGCAGCCCTGCTCGTGCTTCGTCAATGGAATCCTTGAACCCTTCCAGCCGATTCCTTTCTCGGTTTAGCCTCACTCCTGGTGATGTAAGCTTCAGACTGAGTAGAACAACCAGTTCGGGGTCATCAAAGCATTGCCATGTTTCTTCTTCAAGTTTTTCAATGTATAACAATGATGACGAGCTGCATTTTCATCCCGGATCCACTGGCAGCTTGGTTAATAGAAATGACACTCGACATTGTAGTGACGACTTGCTTCCTGGATCTTTTGCTAATCATATGACTGCAAATACTTCCAATACTGTAAGGTCTAATGCCCTGGCGTCAGGTTCGTCCGGAAAATCTCTGAACAATTCAACAGTTTCTCCTACCCAGGATGTGGTTAGAGATGGAGGCGGTACAAGAGAAGGGTTGGATGTGAACTTGTATTCTCCAAGACTTCGGTATGGAACAGAAAATATTGAGACTAGAAACATTGATCGACAAAATGGAACTCGAGAACCTGTTGAACGGAATGTTCGATTTAGCCGAACTTTAAGTGTTGGCAGGCTTCGTGATAGAGTTCTTCGTCGATCAACATTGTCTGACTTCACCTTTTGCCCTCTtcaacaagaaagagaaggaagagatGCTAGTCAAAATGGTGAAAGACAATCAGGGGAGGCAGATTCAATAGTTTCCCCATCCTATAGTAATGCTGTAAATTCTCCATCTACATCTGGGTATTCTCCATCCAGTATGTCTAGTTCCTTGTTCAGCGTCCAAGATTTTGAGGTTGAGCCTTCACGACCAAGAGAAGCTAGATATCAGGATCTACTGGAACATCGGTCCAATTTCCTTGAACGGAGAAGACGCATACGGTCTCAGGTCCGTGCTCTTCAGCGGTTGGGAAGCCGGTTTGAAAACTTGTCTGGCCATGACAGATCATGCATATCGTCTGGTCAACATAGAAATGGTCGTTGTACGTGCCGTATTAGGAGTCGTGACGGCAATGTAAATGATGATACTAGTGCCAGAGCAAGCATATCAAGAATTGTTATGCTGGCCGAAGCCTTATTTGAGgttCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCGCCCCTCTGTGTCTTCTATTGGATCTGTTCCTGCACCTGCTGAAGTTGTGGAGTCCTTGCCTGTCAAATTATACACGAAGTTGCATATACATCAAGAGGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAGGATGGTGACAGCATGCGGGTGTTGCCGTGCCATCACGAATTTCATAGATCATGTGTAGACAAGTGGCTTAAGGAGATTCATCGGGTATGCCCGTTATGTAGGGGAGACATCTGCATGTCAGATTCACTGCCAACGGAGAACTA 1736 0.4447 MGSNGSKATSSCGSSSTSSSSGSFRRGRSKGSRGFHSYCLGTTSGSHDSDNDDQACVQNKVNGGNGTCINRHEIDSDETKTGSFGKIKSKKSRPCMPSNIELDEWGQTSIHNAASRSGSSPARASSMESLNPSSRFLSRFSLTPGDVSFRLSRTTSSGSSKHCHVSSSSFSMYNNDDELHFHPGSTGSLVNRNDTRHCSDDLLPGSFANHMTANTSNTVRSNALASGSSGKSLNNSTVSPTQDVVRDGGGTREGLDVNLYSPRLRYGTENIETRNIDRQNGTREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPLQQEREGRDASQNGERQSGEADSIVSPSYSNAVNSPSTSGYSPSSMSSSLFSVQDFEVEPSRPREARYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCISSGQHRNGRCTCRIRSRDGNVNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKLHIHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHRSCVDKWLKEIHRVCPLCRGDICMSDSLPTEN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01024 578 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 578 - -
Bva08g01024 578 MobiDBLite consensus disorder prediction 1 35 - -
Bva08g01024 578 CDD RING-H2_PA-TM-RING 522 565 - -
Bva08g01024 578 ProSiteProfiles Zinc finger RING-type profile. 523 565 IPR001841 -
Bva08g01024 578 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 578 - -
Bva08g01024 578 MobiDBLite consensus disorder prediction 221 244 - -
Bva08g01024 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 570 IPR013083 -
Bva08g01024 578 MobiDBLite consensus disorder prediction 221 256 - -
Bva08g01024 578 MobiDBLite consensus disorder prediction 334 364 - -
Bva08g01024 578 Pfam Ring finger domain 522 565 IPR001841 -
Bva08g01024 578 MobiDBLite consensus disorder prediction 71 85 - -
Bva08g01024 578 SUPERFAMILY RING/U-box 501 571 - -
Bva08g01024 578 MobiDBLite consensus disorder prediction 67 99 - -
Bva08g01024 578 MobiDBLite consensus disorder prediction 1 27 - -
Bva08g01024 578 SMART ring_2 523 564 IPR001841 -
Bva08g01024 578 MobiDBLite consensus disorder prediction 322 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01024 Bva-Chr8 5245095 5249023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01024 212 572 C3H Transcription Factor Family AT5G45290 58.177 3.23e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01024 - - gmx:100815830 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01024 08 5245095 5249023 Bva08g01024 08 5245095 5249023 ECH