Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00986 ATGATAGCTGGATACGTGCAAATTGTGCATACACTAAGAAAAACTTCGACGCAAATGAGGCTGAAGAGCGAGGGAGACAgACATAGCCGAGGGAGAAACAAAGGATTAGGGTTTATCAAATTAACCTTTGCGATTGTGCATTTTCGTTGTCCTCGCACCTCAAGtatttccttcaatttctATTCAGGAGGTTGTGTTTCTCATGCGTCCTTAAAATTGGAAATGAGTGATaccaaagaaaatgagaaagctGGGCTGGACGTGCCAGTGGCTGTAGATGAAAGCCAGAAGTTGGGTGACGCACAGGTTCAACCTGAAGGTTCTTCTGCTCCTGCCCCGGTTGtggaaaattcaaataacGTTGAGAATGCGAAGGTAGAGGCACCTCCTGAAGATAAAAATGTGGAACCAGAGGCCATTTTGGAGAAGATTCCCCATCAAGAAGTCCGAAGTTCTCTTCACTCAGTTCCAGTAGAAGATAATGCTCGAATTTCAGTTAAAGCTGATTGTGAGCCCACTTCAGTCGTGAAGACCGAAGTCAATGAATTAGCTCAGAGAAGTTCAGGTGTTGAGAATGATTCCATTGcttgtgaaaataatattgatgCCACTGTAACTGCAATGGTGATCAAGCCTGAAGCTTGTGAAGCTCCTGAGAGTAAAACTTGCAATAATGGTGACTCCACACCGTCAAATCATAGTAAACTCACTCCACTACAAGTTGTCCCCCCTCAAACAAAAGCTGAAGTTGGGAATGGAGTTGAGAATAAGATTAATGAAAAGCAAGTTGCTGCACCTGTAGACAATGGGAATTCAAACTCCAAGAACTCCTTTTTCTTGGATGCTGACCACTCATATGATGGCAATGAGTCAGGAACGGAAGAAGAGCAATCGGCTTTCATGAAGGAGCTTGAAAATTTCTTCAGGGAGCGGAGCATGGAATTCAAACCCCCAAAGTTCTACGGAGAGGGCCTTAATTGCCTTAAGTTATGGAGAGCTGTAACCAGATTGGGCGGCTATGATAAGGTAACTTCATGTAAGTTATGGCGGCAAGTTGGAGAGTCCTTCAAACCCCCAAAGACGTGCACTACAGTTTCATGGACATTTCGAGGGTTTTATGAGAAGGCACTACTTGATTATGAAAGGCATAACACAAAGGGTGGCGAGCTTGCTGTACCTATTGCTTCTCATTCGGAGCCCATTAATATTGATAATCAGGCTTCAGCATCAGGTAGAGCACCGCGGAGAGATGCTGCTGCAAGGGCCATGCAGGGTTGGCACTCTCAACGTCTTCTTGGTAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATTCTCTTTCTATGCAAAAGCGTGAAAAGCAGCTTAAAAACATCAATTTACTTAAACGTAAGAAAACGTCTTACATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCAACTAAACCACAATTGGATACGGCAGTGGTTGATATTGGACCTCCAGCTGATTGGGTAAAAGTCAATGTCCAAAAAACtAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGTCTTCTGCGGGAAGAGGTGCGCGTTCAATCTGATCCAGCTGGGCGCTTGGTCATAAGTGGTGAACCAGAGCATCCTGATAATCCGTGGGGTGTGACGCCTTTCAAAAAGGTTGTGAGCTTACCTTCAAGAATTGATCCCCATCAGACATCGGCTGTGGTGACCCTGCACGGACAGTTGTTTGTTCGTGTGCCATTTGAGCAGTCAGAATA 1769 0.4296 MIAGYVQIVHTLRKTSTQMRLKSEGDRHSRGRNKGLGFIKLTFAIVHFRCPRTSSISFNFYSGGCVSHASLKLEMSDTKENEKAGLDVPVAVDESQKLGDAQVQPEGSSAPAPVVENSNNVENAKVEAPPEDKNVEPEAILEKIPHQEVRSSLHSVPVEDNARISVKADCEPTSVVKTEVNELAQRSSGVENDSIACENNIDATVTAMVIKPEACEAPESKTCNNGDSTPSNHSKLTPLQVVPPQTKAEVGNGVENKINEKQVAAPVDNGNSNSKNSFFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNTKGGELAVPIASHSEPINIDNQASASGRAPRRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSLSMQKREKQLKNINLLKRKKTSYMDNAVKAARSKPTKPQLDTAVVDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00986 589 Gene3D - 483 589 IPR008978 -
Bva08g00986 589 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 74 588 IPR045147 GO:0006357
Bva08g00986 589 SUPERFAMILY ARID-like 289 398 IPR036431 GO:0003677
Bva08g00986 589 SMART bright_3 295 386 IPR001606 GO:0003677
Bva08g00986 589 Pfam Hsp20/alpha crystallin family 506 588 IPR002068 -
Bva08g00986 589 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 74 588 - -
Bva08g00986 589 Pfam ARID/BRIGHT DNA binding domain 297 381 IPR001606 GO:0003677
Bva08g00986 589 SMART ARID_2 291 381 - -
Bva08g00986 589 SUPERFAMILY HSP20-like chaperones 498 585 IPR008978 -
Bva08g00986 589 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 489 589 IPR002068 -
Bva08g00986 589 CDD ACD_sHsps-like 504 584 - -
Bva08g00986 589 CDD ARID 296 381 - -
Bva08g00986 589 MobiDBLite consensus disorder prediction 218 238 - -
Bva08g00986 589 MobiDBLite consensus disorder prediction 221 238 - -
Bva08g00986 589 ProSiteProfiles ARID domain profile. 294 385 IPR001606 GO:0003677
Bva08g00986 589 Gene3D - 294 391 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00986 Bva-Chr8 5021300 5029453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00986 277 587 ARID Transcription Factor Family AT1G76510 62.025 8.66e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva08g00986 HSP20 9.1e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00986 - - gmx:100781627 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00986 08 5021300 5029453 Bva11g01460 11 14159010 14163960 BWGD
Bva08g00986 08 5021300 5029453 Bva08g00986 08 5021300 5029453 ECH