Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00973 ATGACTCGCACACTCAGAATTCTTAAAACTGCAGACAACGCTGCGGTGGCAGCGCCGCCGCCGGAGTCCGTTGCCTTGGAATCGGACTTCGTGGTGATTCTGGCCGCTCTGCTCTGCGCTCTGATATGCGTGGTGGGTCTCATCGCCGTCGCACGCTGCGCGTGGCTCCGACGCGGTTCTGGTCCCGGTGCTTCCCCGAGGCAAGCGTTGGCCAACAAGGGATTGAAGAAGAAGGTTCTCCAATCGCTACCGAAGTTCACTTACATTGACAATAGCAATCCCAGCAAATGGGTGGCCACATCGGAGTGTGCGATTTGCTTGGCGGAGTTCGCCGAAGGAGACGAGATCCGGGTACTGCCGCAGTGTGGCCACGGGTTTCACTTGAATTGTATAGATACTTGGCTTGGGTCCCATTCTTCTTGCCCATCTTGTCGGCAGATTCTGGCGGTGACGAGGTGCCAGAAGTGCGGCCAGTATCCGGCGATTGGCGGCGGAGCTTCCAGAACCTCTGTTACTGAAACAGAACTGAAATCCGGCGAAGAGCGCAATGCTGCCACTGCTAGTAGTAACGATATTACCGCTAGCGTCGATAGTCACGCTCACGGTGTTAATAATGGTTTCTTGCCTTG 629 0.558 MTRTLRILKTADNAAVAAPPPESVALESDFVVILAALLCALICVVGLIAVARCAWLRRGSGPGASPRQALANKGLKKKVLQSLPKFTYIDNSNPSKWVATSECAICLAEFAEGDEIRVLPQCGHGFHLNCIDTWLGSHSSCPSCRQILAVTRCQKCGQYPAIGGGASRTSVTETELKSGEERNAATASSNDITASVDSHAHGVNNGFLP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00973 209 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Bva08g00973 209 SUPERFAMILY RING/U-box 79 150 - -
Bva08g00973 209 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 180 - -
Bva08g00973 209 SMART ring_2 103 144 IPR001841 -
Bva08g00973 209 CDD RING-H2_PA-TM-RING 102 145 - -
Bva08g00973 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 150 IPR013083 -
Bva08g00973 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 180 - -
Bva08g00973 209 MobiDBLite consensus disorder prediction 181 200 - -
Bva08g00973 209 MobiDBLite consensus disorder prediction 177 209 - -
Bva08g00973 209 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00973 Bva-Chr8 4952116 4953133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00973 1 156 C3H Transcription Factor Family AT1G76410 62.805 6.65e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00973 - - gmx:100787383 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00973 08 4952116 4953133 Bva11g01449 11 14108846 14109707 BWGD
Bva08g00973 08 4952116 4953133 Bva08g00973 08 4952116 4953133 ECH
Bva08g00973 08 4952116 4953133 Bva10g01099 10 7920176 7924765 ECH