Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00966 ATGATTAAATTTTGGCTTGTGGTCTTGATGGTTCTGTCCAGTGGGTTCTATTCAACTGGGGCTGTCATGAATGATTCCACTGTACCTGATTCTGTAAACATTGGAATTCTCTACTCTTTCAATACTAGTATTggtagaattttaaaaatcgcCATGGAAGCTGCAGTTGAAGATGTAAATTCTGATCCATCTATTCTTGGTAAAACCCAACTGAAAGTCATAATGCAAGAGGATTCCAAGTACAAAGGTTTCTTGAGCATTGCTGAAACCTTGCAGCTCATGGCAAAACATACTGTTGCCATAATTGGTCCCCAATCCTCTATTACGGCTCATGTCATATCTCATGTAGCAAATGAGCTCCAAGTGCCACTGCTATCATTCTCAGCAACAGACCCAACCCTTTCTTCACTTCAGTTCCCATTCTTCATCAGAACTGCTCAAAATGATCTTTTTCAGATGACTGCAATAGCAGAACTTGTTGTATTCTTTGGGTGGAGACAGGTTATTGCAATCTATGTTGATGACGACCACGGGAGAAATGGAATCACTGCATTAGGGGATAAGCTTGCTGAGAAACGTTGTAAGATCTCATTTAAAGCACCGATGAGCACTGAAGCAACTAAGGAGGAGATTACTGATGTGCTTGTTCAGGTTGCTCTTGCAGAATCTCGGATTATAGTTCTTCACACTAACACTATCTGGGGGCCTAAGGTTTTCAGTGTGGCACAGAATCTTGGGATGATGGGAACTGGGTATGTCTGGATAGCCACTAGTTTCCTTTCTACTCTGCTGGATACTGCTAGTCCCCTCCCTTCAGATGAAATGCAAGACATTCAAGGAGTTGTTACATTACGCATGTACACACCAGAGACAGAGCTGAAAAGGAGATTTGTTTCTAGGTGGAAAAACTTGACAAGAGGAAACACTGCTAGTGGCCCCATGGGACTGACTACTTATTGTCTCTATGCATATGATACAGTTTGGTTACTTGCTCGTGCAATCGacacatttttcaaaaaagggGATCgaattacattttcaaatgattCAAAGTTATCTCAACTACATGGAGACAGCCTACATCTTGATGCTTTGAACATTTTTAATGAAGGGAATAAGTTGCGTAGTAGTATTTTAGGAGTTAACATGACTGGTGTAACAGGTCAAGTCAAGTATACATCTGATGGGAACCTTGTTAATCCAGCGTTTGAAGTCCTTAATGTGATAGGGACAGGAGTTCGGAAGATTGGTTATTGGTCTAATCATTCTGGATTATCAGTTGTTCCTCCTGAATCACTTTATTCAAAACCAGCCAATCGTTCTGTTGCTAACCAAAAGCTACATGATGTGATTTGGCCTGGAGATACAGTCCACAAGCCTCGCGGTTGGGTTTTTCCCAACAGTGGAAAGCGTTTAAAAATTGGAATACCAAAAAGGGTAAGTTACCGTGAGTTTGTGTCTCAAGCACAAGGCGCAGACTTGTTCAAGGGTTTCTGCATTGATGTATTTCTTGCTGCAGTGAACTTGTTGCCATATGGTGTCCCATATAATTTTGTCCCGTTTGGAGATGGTAACAGCAACCCTAGTAACACTGAGCTTGTCCGTCTGATCACAGCGGGAGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACGGAGAGAACAAGGATGGTTGATTTTACTCAACCATTCATTGAGTCTGGTCTAGTAGTAGTGACACCTGTAAAGAAGTTGGAAACCAGTGCTTGGGCCTTTCTTAGGCCATTTACTCCAATGATGTGGGCTGTCACAGGTATCTTCTTCCTGTTTGTGGGAGCTGCTGTTTGGATTTTGGAACATCGGCTGAATGATGATTTCCGGGGACCTCCCAAGAGGCAATTTGTTACAATTTTGTGGTTCAGTTTTTCAACCATGTTCTTTGCCCACAGGGAAAAAACAGTGAGCACTCTTGGTCGTTTCGTGCTGCTTATATGGTTATTTGTAGTTCTGATAATTAACTCAAGTTACACAGCAAGCTTGACCTCAATCCTCACGGTGCAACAGCTTGTTTCCCCTATTGAAGGCATTGAAAGTTTGATTAATATCAAAGATCGAATTGGCTACCTGCAAGGTTCTTTTACCAGAGATTATTTGATTGAGGAAGTTGGTATAGATGAATCCAGACTTGTTCCCTTAAAGACACCAGAAGAGACTGCTAAAGCACTGAAAGATGGTTCCCATAATGGTGGTGTTACTGCTTATATTGATGAGCGTGCATACACAGAGCTCTTCCTTTCAAGTCGCTGTGATTTTACTATTGTAGGTCAAGAGTTCACGAGAAACGGTTGGGGATTTGCTTTTCCAAGAGACTCACCATTGGCGATTGACATGTCGACTGCTATTCTGGAATTGGCCGAGAATGGAGATCTGCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGCCTATCTCAAGGTTCAAAGCTTGAAGTGGACAGACTTAATCTTAAAAGCTTTTGGGGTCTCTATCTAGTTGCTGGGCTTGCTTGTTTCCTTGCTCTCCTCATATATCTTATACAGATAATGAGGCAGTACAAGAAGGACCACTCAGAAGAAGTTGAATCTTCTAATCATAGTCAAGGATCTTCGCGTGTCCGGACATTCCTTTCATTTGTTGACGAAAAAGCCGAAGACGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAGAGGATCTCATACAGGAGCAGTGATGGTGGATCAAGCTCAGCCATGGCCTCCAGCAAAGAATATTCTCAACCAGCAGCTTCAAACAGAAGCACAGATTGTGTTACGGGAGAGGATCAATGCCAATGCTA 2840 0.4165 MIKFWLVVLMVLSSGFYSTGAVMNDSTVPDSVNIGILYSFNTSIGRILKIAMEAAVEDVNSDPSILGKTQLKVIMQEDSKYKGFLSIAETLQLMAKHTVAIIGPQSSITAHVISHVANELQVPLLSFSATDPTLSSLQFPFFIRTAQNDLFQMTAIAELVVFFGWRQVIAIYVDDDHGRNGITALGDKLAEKRCKISFKAPMSTEATKEEITDVLVQVALAESRIIVLHTNTIWGPKVFSVAQNLGMMGTGYVWIATSFLSTLLDTASPLPSDEMQDIQGVVTLRMYTPETELKRRFVSRWKNLTRGNTASGPMGLTTYCLYAYDTVWLLARAIDTFFKKGDRITFSNDSKLSQLHGDSLHLDALNIFNEGNKLRSSILGVNMTGVTGQVKYTSDGNLVNPAFEVLNVIGTGVRKIGYWSNHSGLSVVPPESLYSKPANRSVANQKLHDVIWPGDTVHKPRGWVFPNSGKRLKIGIPKRVSYREFVSQAQGADLFKGFCIDVFLAAVNLLPYGVPYNFVPFGDGNSNPSNTELVRLITAGVFDAAVGDITITTERTRMVDFTQPFIESGLVVVTPVKKLETSAWAFLRPFTPMMWAVTGIFFLFVGAAVWILEHRLNDDFRGPPKRQFVTILWFSFSTMFFAHREKTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLVSPIEGIESLINIKDRIGYLQGSFTRDYLIEEVGIDESRLVPLKTPEETAKALKDGSHNGGVTAYIDERAYTELFLSSRCDFTIVGQEFTRNGWGFAFPRDSPLAIDMSTAILELAENGDLQRIHDKWLLSSACLSQGSKLEVDRLNLKSFWGLYLVAGLACFLALLIYLIQIMRQYKKDHSEEVESSNHSQGSSRVRTFLSFVDEKAEDVKSRSKRRQMERISYRSSDGGSSSAMASSKEYSQPAASNRSTDCVTGEDQCQC 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00966 946 CDD GluR_Plant 470 812 - -
Bva08g00966 946 Gene3D - 757 819 - -
Bva08g00966 946 MobiDBLite consensus disorder prediction 908 946 - -
Bva08g00966 946 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Bva08g00966 946 Pfam Bacterial extracellular solute-binding proteins, family 3 495 812 IPR001638 -
Bva08g00966 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Bva08g00966 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Bva08g00966 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Bva08g00966 946 SMART GluR_14 471 814 IPR001320 GO:0015276|GO:0016020
Bva08g00966 946 MobiDBLite consensus disorder prediction 894 946 - -
Bva08g00966 946 PANTHER GLUTAMATE RECEPTOR 10 931 - -
Bva08g00966 946 SUPERFAMILY Periplasmic binding protein-like I 28 463 IPR028082 -
Bva08g00966 946 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Bva08g00966 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 931 - -
Bva08g00966 946 Gene3D - 50 400 - -
Bva08g00966 946 SUPERFAMILY Periplasmic binding protein-like II 450 814 - -
Bva08g00966 946 Gene3D - 148 425 - -
Bva08g00966 946 Gene3D - 470 582 - -
Bva08g00966 946 Gene3D - 583 711 - -
Bva08g00966 946 PIRSF IGluLR_plant 1 945 IPR017103 -
Bva08g00966 946 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00966 Bva-Chr8 4903156 4907913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00966 5 911 Ion Channels AT3G51480 61.209 0.0 1170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00966 K05387 - gmx:100788917 1421.37