Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00965 ATGAGCAAAGTTTGGCTTGTCATGTTCGTGATCTTCTACTATGGTTTCCTTTCACATGGAGTCACTGATGTTTCTAATAGACCCAGTGTCGTTAACATTGGGGCACTTCTATCTTTCAATTCAACCGTAGGCAAAGTGGCAAAAGTTGCCATAGACGCTGCAGTCAAAGATATAAATTCCAATCCGACGATTCTCAATGGAACTCGGCTTAATATTTCAATGCAGGATACAAAGTTGTCAAGTGGGTTCCTAGGAATCATTGATTCATTACTATTGATGGAGAAAGACACCGTGGCCATAATAGGTCCCGAATTCTCAGTCATGGCTCATGTGATTTCACATATAGCAAATGAGCTGCAAGTACCTTTACTTTCATTTGCTGCCACTGACCCTACCTTGTCTCACCTTCAGTTCCCATACTTTGTTAGGACAACAGAGAGTGATCTGTTTCAGATGGCTGCTATTGCAGACATCGTTAGTTATTACGAGTGGAGAGATGTAGTAGCAGTCTATATTGATGATGATCATGGAAGAAATGGGATAGCTGTATTAGGGGATAAGCTAGCTGAAAAACGTTGTAAAATCTCATATAAAGCAACCCTTAAACCTAATGTCACAATATCCAAGAATGAAGTATATGACGTGTTAGTGAAGGTAGCTTTAATGGAGTCTCGGGTTATAGTACTCCACACATACCCTGATTTTGGTCTAGAAGTGCTTCATGTGGCTAATGAACTTGGCATGGTGAATGGGTATGCGTGGATAACCACTGATTGGCTTCTTACTTTACTAGATACAGACCCGTCCAAGGCTGCTCCATACTTGAATGACATCCAAGGTGTTATCACCTTGCGCATGTACACCCCAGATAATCCAGGTAAAAGGGATTTTGTTTCTAGGTGGGGCAATCTAACTAGAGAAAAAGCTACTGATCAGGGTAGTCTTCGGTTGAACAACTATGGTCTATATGCCTATGACACTGTCAGGGTTCTTGCTTATGCACTTGatgcatttttcaaaaatgggggaactttgtcattttcaaatgattcaagtttaaacaatttaaggGGAGACAACTTGCATTTGGATACAATATGGGTCTTTTCTAGTGGAAGTCTTCTGCTTCAGAACATTTTAGAGGTCAATACAACAGGTTTAACAGGCCAATTGAAGTTTGATTCAGATGGGAACCTTGTGGATCCTGCATATGAACTCATTAATGTGATTGGCACTGGCGTTAGAAGAATCGGTTATTGGTCAAACACTTCTGGTTTATCAGTCACTGAACCAGGTAAAAGTAAAACCCCCATGACTCCAAAACTCTATGGTGTCATCTGGCCTGGCCAAACAACTCAAACACCTCGAGGTTGGGTATTCTCCAGCGGTAATGGAAGGCATTTGAGAATTGGTGTCCCTCTGCGAATTAGTTACCGCGAATTTGTATCAGAAGTTGCGGATACTGATACATTTGGTGGTTATTGTATAGATGTGTTTACTGCTGCACATGACTTGTTGCCATATCCTGTCCCATATAAGTTCATTCCTTTTGGTGATGGTCGAACCAACCCATTGAACTCACAACTTCTGCACATGATTACAACTGGCAAATTTGATGCTGTGGTGGGCGACATTACCATTACCACAAACAGAACAAAAATAGTGGACTTCACACAGCCATACATTGAATCAGGACTAGTTGTTGTTGCCCCTATCAGGAAGTTGAATTCTAGTGCTTGGGCTTTCCTGAGACCATTTACTCCAATGATGTGGTTTGTGACTGGAATGTTCTTCTTAGTTGTGGGAGCTGTTGTTTGGGTTTTGGAACGCAGGATAAATGATGACTTTAGAGGCCCAGCTAGAAGGCAGTTTGTCACCATTATATGGTTTAGCTTTTCaactttgttcttttctcACAGAGAGAAAACTGTGAGCACCCTTGGTCGCTTAGTACTAATTATATGGCTGTTTGTGGTTCTGATACTCAACTCAAGCTATATTGCAAGTTTGACCTCTATTCTTACGGTGGAACAGCTCTCTTCCTCAGTGAAGGGAATCGAAAGCTTGGTAACCAGCAATGATCGCATTGGTTTCCTGCGTGGTTCATTTGCTGAAAATTATCTAACTGAGGAGCTTAACATACACAAATCCAGGCTTGTTGCTCTGAACTCTCCTTCAGAGTATGAGAAAGCCTTAAAGGATGGGCCTGGTAATGGTGGTGTTGCAGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTGGTATTGTGGTCAAGAGTTCACCAAAATGGGATGGGGCTTTGCTTTCCCAAGGGACTCTCCCCTA 2348 0.4076 MSKVWLVMFVIFYYGFLSHGVTDVSNRPSVVNIGALLSFNSTVGKVAKVAIDAAVKDINSNPTILNGTRLNISMQDTKLSSGFLGIIDSLLLMEKDTVAIIGPEFSVMAHVISHIANELQVPLLSFAATDPTLSHLQFPYFVRTTESDLFQMAAIADIVSYYEWRDVVAVYIDDDHGRNGIAVLGDKLAEKRCKISYKATLKPNVTISKNEVYDVLVKVALMESRVIVLHTYPDFGLEVLHVANELGMVNGYAWITTDWLLTLLDTDPSKAAPYLNDIQGVITLRMYTPDNPGKRDFVSRWGNLTREKATDQGSLRLNNYGLYAYDTVRVLAYALDAFFKNGGTLSFSNDSSLNNLRGDNLHLDTIWVFSSGSLLLQNILEVNTTGLTGQLKFDSDGNLVDPAYELINVIGTGVRRIGYWSNTSGLSVTEPGKSKTPMTPKLYGVIWPGQTTQTPRGWVFSSGNGRHLRIGVPLRISYREFVSEVADTDTFGGYCIDVFTAAHDLLPYPVPYKFIPFGDGRTNPLNSQLLHMITTGKFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKLNSSAWAFLRPFTPMMWFVTGMFFLVVGAVVWVLERRINDDFRGPARRQFVTIIWFSFSTLFFSHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLVTSNDRIGFLRGSFAENYLTEELNIHKSRLVALNSPSEYEKALKDGPGNGGVAAIIDERAYMELFLATRCEFGIVVKSSPKWDGALLSQGTLP 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00965 782 Pfam Ligand-gated ion channel 590 693 IPR001320 GO:0015276|GO:0016020
Bva08g00965 782 Gene3D - 49 401 - -
Bva08g00965 782 Gene3D - 579 711 - -
Bva08g00965 782 PANTHER GLUTAMATE RECEPTOR 16 766 - -
Bva08g00965 782 SUPERFAMILY Periplasmic binding protein-like I 27 458 IPR028082 -
Bva08g00965 782 CDD PBP1_GABAb_receptor_plant 32 428 IPR044440 -
Bva08g00965 782 SUPERFAMILY Periplasmic binding protein-like II 444 764 - -
Bva08g00965 782 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 766 - -
Bva08g00965 782 PIRSF IGluLR_plant 1 773 IPR017103 -
Bva08g00965 782 Pfam Receptor family ligand binding region 49 411 IPR001828 -
Bva08g00965 782 Pfam Bacterial extracellular solute-binding proteins, family 3 488 757 IPR001638 -
Bva08g00965 782 Gene3D - 147 426 - -
Bva08g00965 782 Gene3D - 464 578 - -
Bva08g00965 782 SMART GluR_14 469 778 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00965 Bva-Chr8 4897865 4900785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00965 1 764 Ion Channels AT1G42540 59.226 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00965 K05387 - gmx:100790502 1167.53