Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00953 ATGCCGAAAGCTAAAGCTGATGCGAAAGCGACCGATAATAGATTGAAGCGCAAGGGCGCTGGAGCAGGGAGGAAGCAGACGAAGAAAGCTGCCAAGGATCCAAACAAGCCGAAGAGGCCTCCGACCgccttctttgttttcatGGCGGAGTTCAGAGAGACATACCAAAAGGAGCATCCGAACAATAAAGCCGTCTCTGTTGTTGGAAAAGCCGGTGGTGCAAAATGGAAGTCGTTGTCTGATGCTGAGAAAGCTCCATTCATAGCGAAGGCAGACAAGAAGAAACAAGAGTATGAGAAGACCATGCAGGCATACAATAAGAAACTGGATGGAGGTAAAAATCCCTCAGAGGAAGAGGAGTCTGACAAATCTAAGTCTGAAGTCAATGATGAGGATGGAGATGATGAGAGTGGGGAGGAGGAAGAGGATGATGAGTG 437 0.4668 MPKAKADAKATDNRLKRKGAGAGRKQTKKAAKDPNKPKRPPTAFFVFMAEFRETYQKEHPNNKAVSVVGKAGGAKWKSLSDAEKAPFIAKADKKKQEYEKTMQAYNKKLDGGKNPSEEEESDKSKSEVNDEDGDDESGEEEEDDE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00953 145 SMART hmgende2 36 107 IPR009071 -
Bva08g00953 145 MobiDBLite consensus disorder prediction 86 130 - -
Bva08g00953 145 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Bva08g00953 145 MobiDBLite consensus disorder prediction 1 42 - -
Bva08g00953 145 Coils Coil 88 108 - -
Bva08g00953 145 Gene3D High mobility group box domain 21 122 IPR036910 -
Bva08g00953 145 MobiDBLite consensus disorder prediction 131 145 - -
Bva08g00953 145 MobiDBLite consensus disorder prediction 1 19 - -
Bva08g00953 145 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 143 IPR031061 -
Bva08g00953 145 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 143 - -
Bva08g00953 145 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Bva08g00953 145 CDD HMGB-UBF_HMG-box 37 103 - -
Bva08g00953 145 MobiDBLite consensus disorder prediction 71 145 - -
Bva08g00953 145 SUPERFAMILY HMG-box 25 111 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00953 Bva-Chr8 4831247 4832872 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva08g00953 HMG_box 2.3e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00953 K25507 K22507 gmx:100499992 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00953 08 4831247 4832872 Bva08g00953 08 4831247 4832872 ECH