Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00948 ATGGCGGTCAACTGCCGGCAGAATACAACACAGCTTGATATGGGTCTCTGCTTTGGGTCTCTCGGCCGTCCTGGACCTGGTTATAGCGTCAACAGACCTCCATATTCAGGAAGTGCGAGCACTGAAAGCAAGACCGTAGCATTATCTGCCACAAGCAGCAGTGCTGGAAAGAGTCAATTTTCGGAAATAGCAAGTGGAAGCCTTGGTGACGAGTCCCATCCTTCACCAAATGGGCAAATTTTGGAAACGCCGAACTTGAAAGTCTTCAGCTTTGGGGACTTGAAGACGGCCACTAGGAATTTCAGGGCGGATACATTGCTGGGTGAAGGTGGTTTCGGTAAAGTTTACAAAGGTTGGTTAGATGAAAAGACACTTACACCGGCTAAGTCGGGGTCTGGAATGGTGGTGgccattaaaaaattgaatccaGAAAGTTTGCAAGGCTTTCAAGAGTGGCAGTCAGAAATCAACTTCCTAGGAAGGCTTTCTCACCGCAACCTGGTCAAGTTATTGGGTTACTGTTGGGACGAAGAGGAGCTTCTTCTTGTGTACGAGTTCATGCCAAGAGGAAGCCTGGAGAATCATCTCTTCAGTAGAAAGCACATAGAACCACTTTCTTGGAACATGCGGCTCAAAATAGCTATTGGTGCTGCTCGGGGTACGGCCTTTCTTCACGCTTCAGAGAAGCAAGTTATATACAGAGATTTCAAAGCATCAAATATACTACTTGATGGGAATTACAATgcaaaaatttcagattttggaTTGGCAAAATTAGGACCTGCTGGAGGAGAGTCACATGTGACTACAAGGATCATGGGCACATATGGCTATGCTGCTCCAGAATACATGGCAACAGGACATTTGTATGTGAAGAGTGATGTGTACGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGCGAACGAGCACTTGATCCAAAGCGGCCAAGTGGGCAGCATAACCTGGTTGATTGGCTTAAGCCAATTCTTCCTTATAGGAGAAAGTTGAAAAGCATTATGGATAAGAAGATTGAGGGCCAATATTCTCCCAAGGCAGCATCACAAGCAGCGCAGCTTACTCTAAAATGCCTTGAACCTGACCCTAAAAACCGTCCTTCTATGAAAGATGTACTTGAAGAATTGGAAAGAATTCAAGCTATACAGGATAAATCAAAAGAAGCCGCAAGCCACTA 1196 0.444 MAVNCRQNTTQLDMGLCFGSLGRPGPGYSVNRPPYSGSASTESKTVALSATSSSAGKSQFSEIASGSLGDESHPSPNGQILETPNLKVFSFGDLKTATRNFRADTLLGEGGFGKVYKGWLDEKTLTPAKSGSGMVVAIKKLNPESLQGFQEWQSEINFLGRLSHRNLVKLLGYCWDEEELLLVYEFMPRGSLENHLFSRKHIEPLSWNMRLKIAIGAARGTAFLHASEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPAGGESHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGERALDPKRPSGQHNLVDWLKPILPYRRKLKSIMDKKIEGQYSPKAASQAAQLTLKCLEPDPKNRPSMKDVLEELERIQAIQDKSKEAASH 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00948 398 PANTHER OS01G0588500 PROTEIN-RELATED 44 395 - -
Bva08g00948 398 Gene3D Phosphorylase Kinase; domain 1 85 186 - -
Bva08g00948 398 ProSitePatterns Protein kinases ATP-binding region signature. 107 140 IPR017441 GO:0005524
Bva08g00948 398 Pfam Protein tyrosine and serine/threonine kinase 104 382 IPR001245 GO:0004672|GO:0006468
Bva08g00948 398 Gene3D Transferase(Phosphotransferase) domain 1 187 398 - -
Bva08g00948 398 SUPERFAMILY Protein kinase-like (PK-like) 85 381 IPR011009 -
Bva08g00948 398 PANTHER OS02G0670100 PROTEIN 44 395 - -
Bva08g00948 398 CDD STKc_IRAK 107 385 - -
Bva08g00948 398 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g00948 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00948 Bva-Chr8 4809427 4812974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00948 87 382 Glycoside Hydrolase AT3G07070 51.007 1.85e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Bva08g00948 PK_Tyr_Ser-Thr 9.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00948 - - gmx:100794193 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00948 08 4809427 4812974 Bva11g01427 11 14003732 14007259 BWGD
Bva08g00948 08 4809427 4812974 Bva08g00948 08 4809427 4812974 ECH