Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00944 ATGGGTGGAGACAGCGCCGTTGATGATGCCACCGAATCGAAGAGTGGTGAAGGAGTAACGATCAACATTCGTTGCTCGAATGGGTCGAAATTCTCCGTTCAGACTACCCTCGAATCAATTGTTGGATCGTTCAAGGAAGTTGTGGCTCGGAACTGCGACATCCCTGCCGATCAGCAGCGATTGATTTACAAGGGGCGGATCCTTAAGGACGATCAAACCCTGCAAAGCTACGGTTTGGAGGCAGATCACACTATCCATTTGGTTCGTGGTTTTACCCCAGCTGCATCAGGCAATCCAACTGGTGGAACCACTACTGGTAGTACAAATACTACAACAAACAATGCAAGAAGTGCTAGCTCTAATGAAGGTGGGGGTTTAGGAGGGTCTGGTTTTGGAGCTTCATTGTTTCCTGGACTTGGCATTAATGGGCTGGGTGGCAGTGGCATGAATGGCTTGTTTGGAGCTGGGCTTCAAGATATTGATCAAATGCAGCAACCGCATTTTCCAAACCCCAATCTAGTCAGAGAGATAATGAACTCACCTGCTATtcagaatataataaataatcctGAGATAATGAGGAATTTTCTAATGAATAACCCACAGATGCGCGAGCTAATGGATCGAAACCCTGAGCTAGCACACATACTCAATGATCCCAGCACTCTCCGCCAGACACTTGAAGCTACAAGAAACCCGGAACTCATGCGTGAAATGATGCGAAATACAGACAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTTAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATGAGAACTCTAACCCATTTGCTGCACTTCTGGGGACACAAGGTGGCCAAGCCAGAGACCAATCAACTAACCCATCTACTACTAGTTCAGAAACAACTGGTGGTTCTCCCTCCCCCAACACTAACCCACTTCCCAATCCTTGGGGCTCTGCTGGTGCAGCTGGAGGTGCTGAAAATAACACAAGCTCGACTACAGGTGGGAATGCTAGGCAGCAGGCACCCACTGGCTTAGGAGGACTTGGTCTCCCAGATCTTGAAGGCATGTTGGGTGCTATGCCTGATACCACTTTACTGACCCAATTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATTCTCTCAAATCCTCAAGCCATGAATCAGATTCTTGGTGTCAATCCTGATCAGCGTGGCATGCCTGATTTAAATTCTCATGTCAGAGAAATGATGCAAAACCCAGAGTTCCTTCGCCTCTTTTCTTCACCTGAGACAATGCAGCAACTGTTGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCGGCAACAATCAACACAGGGGTCAGCTCAAACTGGCGGAGGCACTGGATCAACGAACAACATGGGGTTGGAAATGTTGATGAACATGTTTGGTGGGCTCGGAGCTGGCAGCCTAGCCGTTCCTAACAGATCAGATGAGCCACCGGAGCAATTGTATGCGACCCAGCTGTCGCAGCTTCAAGAGATGGGTTTCTTTGATACGCAAGAGAATATACGGGCTCTTATTGCTACCTCTGGGAATGTTCATGCCGCGGTTGAACGGCTTTTGGGGAACTCTGGTCAGTA 1655 0.4695 MGGDSAVDDATESKSGEGVTINIRCSNGSKFSVQTTLESIVGSFKEVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTIHLVRGFTPAASGNPTGGTTTGSTNTTTNNARSASSNEGGGLGGSGFGASLFPGLGINGLGGSGMNGLFGAGLQDIDQMQQPHFPNPNLVREIMNSPAIQNIINNPEIMRNFLMNNPQMRELMDRNPELAHILNDPSTLRQTLEATRNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNENSNPFAALLGTQGGQARDQSTNPSTTSSETTGGSPSPNTNPLPNPWGSAGAAGGAENNTSSTTGGNARQQAPTGLGGLGLPDLEGMLGAMPDTTLLTQLMQNPAISQMMQSILSNPQAMNQILGVNPDQRGMPDLNSHVREMMQNPEFLRLFSSPETMQQLLSFQQALLSQLGRQQSTQGSAQTGGGTGSTNNMGLEMLMNMFGGLGAGSLAVPNRSDEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00944 551 MobiDBLite consensus disorder prediction 459 478 - -
Bva08g00944 551 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Bva08g00944 551 PANTHER UBIQUILIN 3 551 - -
Bva08g00944 551 MobiDBLite consensus disorder prediction 275 321 - -
Bva08g00944 551 SMART CBM 200 239 IPR006636 -
Bva08g00944 551 SMART CBM 410 445 IPR006636 -
Bva08g00944 551 SMART CBM 364 406 IPR006636 -
Bva08g00944 551 SMART CBM 150 187 IPR006636 -
Bva08g00944 551 SUPERFAMILY Ubiquitin-like 11 107 IPR029071 -
Bva08g00944 551 SMART uba_6 509 547 IPR015940 -
Bva08g00944 551 CDD UBA_PLICs 509 547 - -
Bva08g00944 551 CDD Ubl_Dsk2p_like 19 91 - -
Bva08g00944 551 Pfam UBA/TS-N domain 509 545 IPR015940 -
Bva08g00944 551 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Bva08g00944 551 Gene3D - 491 551 - -
Bva08g00944 551 MobiDBLite consensus disorder prediction 275 363 - -
Bva08g00944 551 MobiDBLite consensus disorder prediction 96 123 - -
Bva08g00944 551 MobiDBLite consensus disorder prediction 337 354 - -
Bva08g00944 551 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 503 548 IPR015940 -
Bva08g00944 551 SUPERFAMILY UBA-like 505 547 IPR009060 GO:0005515
Bva08g00944 551 SMART ubq_7 19 90 IPR000626 GO:0005515
Bva08g00944 551 Gene3D - 195 253 - -
Bva08g00944 551 Gene3D - 7 100 - -
Bva08g00944 551 MobiDBLite consensus disorder prediction 91 123 - -
Bva08g00944 551 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00944 Bva-Chr8 4787219 4792001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00944 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.36e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00944 K04523 - gmx:100776447 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00944 08 4787219 4792001 Bva11g01423 11 13979126 13983998 BWGD
Bva08g00944 08 4787219 4792001 Bva08g00944 08 4787219 4792001 ECH