Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00911 ATGGCGGATTCTCCACTCAGAAGGAGTTCAAGGTCCCCTTCACCTTGGAGAGCTCAGTCAAGATCGAGATCAAGGTCGAGGTCTTGGTCTAAGCCAAGGTCCAGGTCAAGGTCCTGGTCAAGACAGAGACCTAGGTCTCATTCAAGGAGTAGGGGCAGATCAAGGTCCAGAAGTCATGGCCGTGCTGATGCTGGAAATCCTGGAAATACTCTTTATGTGACTGGCCTATCGTCGAGGGTTACTGAGAGTGACCTAGCAGAGCACTTTTCTAAGGAGGGGAAGgTTGCTTCATGCTTTCTTGTAGTGGAGCCTCGTACCAATATATCTCGTGGGTTTGCTTTTGTTACGATGGATGCCGTTGAGGGTGCCAACCGCTGCATCAAGTATCTCAATCAATCAGTTTTACAAGGCCGTTATATCACTGTTGAGAGGAATTCATTGCCTCAGCTATGTTGGCAGCAACCAAAGAGTTCATCCATGACAACTGTAGTGAAACAGCTTGATCATGGCAAGCTTAAACTGCTAATCAAATGCTCTCGAAGAAAAAGGGCAAGAACTCCGACGCCAGGGCATTATCTTGGGTTGAAAAGTACTAGAGACTATGGTTATCGTGGTGACCGTGGAAGGTATCGTGGTGGGTCTGGTCGTGATGATTATCAGCATCGTAGGTCTCCAAGGCGTTCACCATATCGTGGTGGTCGGGATTATTCACCCCGACATTCACCTTATGGAGGAAGATCTAGGAGGGAGAGGTCCAGGTCACTTCCTTATTCTCCTTATGGTAGCCCAGACAGGAGATATGCTCGCGGATCTAGATG 818 0.4841 MADSPLRRSSRSPSPWRAQSRSRSRSRSWSKPRSRSRSWSRQRPRSHSRSRGRSRSRSHGRADAGNPGNTLYVTGLSSRVTESDLAEHFSKEGKVASCFLVVEPRTNISRGFAFVTMDAVEGANRCIKYLNQSVLQGRYITVERSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGSGRDDYQHRRSPRRSPYRGGRDYSPRHSPYGGRSRRERSRSLPYSPYGSPDRRYARGSR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00911 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Bva08g00911 238 PANTHER RNA RECOGNITION MOTIF 2 234 - -
Bva08g00911 238 MobiDBLite consensus disorder prediction 24 56 - -
Bva08g00911 238 MobiDBLite consensus disorder prediction 1 73 - -
Bva08g00911 238 MobiDBLite consensus disorder prediction 145 238 - -
Bva08g00911 238 Gene3D - 8 153 IPR012677 -
Bva08g00911 238 SUPERFAMILY RNA-binding domain, RBD 64 179 IPR035979 GO:0003676
Bva08g00911 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Bva08g00911 238 MobiDBLite consensus disorder prediction 1 23 - -
Bva08g00911 238 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 234 - -
Bva08g00911 238 SMART rrm1_1 70 143 IPR000504 GO:0003723
Bva08g00911 238 MobiDBLite consensus disorder prediction 166 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00911 Bva-Chr8 4646952 4649682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00911 37 151 Eukaryotic Initiation Factors Gene Family AT2G23350 30.508 3.73e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00911 K12897 - gmx:100527350 273.092