Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00903 ATGGATTTTGTAGCAGCCCCATGTCCTTTGCACTCCATTTTGTTGCCTTCGTTGGGGAATTTCGTTGAAAGGGTTAGGCAAATTAGCAGCCTTGCTGTTTCTGTGATTATTGGGAACATCTTCTCTGCGATCTTGACATTCTGCTTTGCGTTAGTGGGCACTTTGTTGGGTGCTATGACTGGAGCTTTGATAGGGCAAGAAACCGAGAGTGGCTTCATTCGAGGGGCCGCAGTTGGTGCCATTTCTGGAGCCGTTTTCTCTATAGAAGTATTTGAATCTTCACTTGTTCTTTGGCAATCTGATGAATCCGGAATTGGGTGTCTTCTATACTTGATTGATGTTATTGCAAGTCTATTAAGCGGGAGACTAGTGCGTGAGAGGATAGGCCCAGCAATGTTAAGTGCCGTCCAAAGTCAGatGGGTGCTGTCGAAACAAGCTTTGACGAGGTTCAGAACCTCTTTGACACTGGAGGTGCCAAAGGTTTATCAGGAGATTTAGTTGAAAAGATCCCAAAGATCAAAATCACAGGCGACAACAACATTGATGCTTCTGGGGAAAGAGTTTCTTGTTCTGTTTGCCTCCAGGACTTTCAACTCGGAGAAACAGTTAGAAGCTTGCCTCATTGTAATCACATCTTCCACCTACCTTGCATAGATAAGTGGCTCTTCAGGCATGGATCTTGCCCACTGTGCAGAAGGGATCTGTA 707 0.4526 MDFVAAPCPLHSILLPSLGNFVERVRQISSLAVSVIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNLFDTGGAKGLSGDLVEKIPKIKITGDNNIDASGERVSCSVCLQDFQLGETVRSLPHCNHIFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00903 235 CDD RING-H2_PA-TM-RING 190 232 - -
Bva08g00903 235 SUPERFAMILY RING/U-box 189 235 - -
Bva08g00903 235 Pfam Ring finger domain 189 232 IPR001841 -
Bva08g00903 235 SMART ring_2 190 231 IPR001841 -
Bva08g00903 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Bva08g00903 235 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 16 235 - -
Bva08g00903 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 235 IPR044523 -
Bva08g00903 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00903 Bva-Chr8 4607090 4609192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00903 22 235 C3H Transcription Factor Family AT5G66070 76.168 6.10e-117 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00903 - - gmx:100306109 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00903 08 4607090 4609192 Bva11g01487 11 14292046 14294240 BWGD