Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00892 ATGACTCTCGAAGGCTTGATATCCATTATCTTCAATTTAATTGGTCTAGTAGAAGGACCGAGGCCAAGGAGCAAGGAAGCCCATCCACTCTACCAGCTAACCTGCAGCACTATTGTCCCACACAAGATCAAGCAGCAGTCATCTGAATCTGAATCTCATTCTGCCTCGGCAGCATCATCGTCAAACATTACTGAAACTTTTGAGGTTGAATGTTGCTGCGTGTGCTTGTCAAggttaaaagagagagatgacATGCGTGTTCTTCCATGCTTGCACAAGTTCCACAGGCTTTGTGTTGATAAATGGCTAAAGGGTCGCCGGAAAACTTGTCCACTGTGCCGGTTTTCAATGGGAGCAGAGGACAAATGTCTTCAAGTTCAAGCACAAGCTTTCACTGATGAGATGGTAATATGGTTTTCTTCCTTCCACATAGCTGGTTTCTG 443 0.4312 MTLEGLISIIFNLIGLVEGPRPRSKEAHPLYQLTCSTIVPHKIKQQSSESESHSASAASSSNITETFEVECCCVCLSRLKERDDMRVLPCLHKFHRLCVDKWLKGRRKTCPLCRFSMGAEDKCLQVQAQAFTDEMVIWFSSFHIAGF 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00892 147 SUPERFAMILY RING/U-box 71 118 - -
Bva08g00892 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 121 IPR013083 -
Bva08g00892 147 Pfam Ring finger domain 72 114 IPR001841 -
Bva08g00892 147 SMART ring_2 72 113 IPR001841 -
Bva08g00892 147 PANTHER TARGET OF ERK KINASE MPK-1 9 122 - -
Bva08g00892 147 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Bva08g00892 147 PANTHER GB|AAF27103.1 9 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00892 Bva-Chr8 4564407 4565297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00892 49 117 C3H Transcription Factor Family AT1G04790 41.026 4.06e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00892 - - gmx:100527665 152.525