Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00875 ATGGCAGAAAATAAAGACGAATGCTCTTGTGAAAGTTCTGTATGTTCACCATCTTCGAGCTCCCCCATGGGTAGCAAGTGCAGATATTTGTTTGATAGAATATGGGGTTTGGGTACTTGTTGTAATAAAAGTAGCACACCACATGGTCGACGAATTTTCCACAGAGATGTTGAAAAGGAAGAATTCCAGTATGCAAGTACTCACTGTCTCTCATCCTACTACAGTGTGTTTGTGGTTCGCCTAGCAATCATGGCCATGCTAGCAATCTTGATTGGGCTGCTCACCATACTAACATGGCATTTCACAAAGATTTATACAACAAAATCACTTAATAGCTTAGCGTATGGCCTTCGTTATGAACTTCTACAACGCCCCATCTTGCGGATGTGGAATATCTTGAATTCTACTGCTGAAATTACAACTGCTCAGGTCAAGCTCTCTCAATATGTAATTAGAAAGTACAGCAACCCTGCCAATCAAGCCCAGCAAGTTGAGCAGCTCTATGAATCTATGAGGGCAGTCACGTGGGCGCTGTTCGCTAGTCGCAGAGCTCTTAATTCAATAACGATCAATTACAAAAACGGCTTTGTCCAGGCATTTCACAGAAATCTGAAGGATAACAATACTTTCTACATCTACTCTGATCTTGCAAATTACTCCATAGGTGCTAGTGGCTCTAATGACATCAATTCACTCTCAACACATCAAGCATGGAATGATAAGGCCATCCATGGCAATAATTCTGCAAAATGGTACCGTGAACCTCTTGATCCTTTAAGTGGTGAGAAGATTGGAAAGGCTACGGAAATAGCACCAGATGATCTAATCAATATTGCTGGCCTTTCTCAAGTACCTGATGGTGTAGCTTCATGGCACGTTTCAGTGAGCAAGTTTACAGATTCACCGTTGCTTTCAGCAGCACTGCCAGTTTGGGATGCTTCTAATAAGAGCATTGTGGCTGTTGTGGGTGTCACAACTGCACTTTATAGTGTAGGCCAATTAATGAAAGAACTAGTGGAGTTTCATAGTGGTCATATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCCACTTCCACGGATGCACCTCTTTTGACAAATTCAACGAAACCACCCAAGCTTAAGATGGCAGTTGATTCTGAAGATGATATCATACGATCGGGAGCAGAGTGGTTACAGAGAAACTATGGAAACAAATTCCCTCGAAGTCATGAAGTTCACGCAGAGAATGCCAAGCTTGGCCACCAGCAATATTACATAGATTCGTTCTTCCTAAACTTGAAGAGACTTCCTTTGGTGGGAGTTATCCTCATTCCTAGAAAATATATCATGGGGGAGGTTGATGAAAGAGCCTTAAAAACATTGGTTATATTGATATCTGCATCATTGTGTATTCTAGTGATTGGATGCGTATGCATTTTGATACTGACGAATGGGGTATCAAAGGAAATGAAACTAAGAGCAGAACTGATCAGTCATCTGGAAGCAAGAAGAAAGGCAGAGGCATCAAGCAACTACAAAAGTCAGTTCCTTGCAAATATGAGtCATGAACTGAGGACACCTATGGCTGCAGTGATTGGATTGCTTGACATTCTTATCTCTGATGATTGTCTCACCAATGAACAATATGCAACAGTTACTCAGATAAGAAAATGTTCAACTGCTCTACTTCGTCTTCTTAACAACATCTTGGATCTCAGCAAgGTGGAATCTGGAAAGTTGGTATTAGAAGATGCAGAATTTGACTTGGGGCGAGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCATAATGTGGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGGTGGTTCGCGGTGATTCTGCTAGGGTGGTTCAAATTTTTGCAAACTTAATCAACAATTCCATTAAGTTTACTGCATCCGGTCACATCATTCTGCGAGGATGGTGTGAGAACCCATATTCTTGGAGTGACAATGCAAATTTTCCTCTTGATCAGAAGAAGTCGCGGTCTGCCCAAAAGATTAGAGTAAAGCAACATGAGAACCACGTAAAAAAGGCATCCAAGAAAGACAACAAAATGATTCTTTGGTTTGAAGTTGACGACACAGGCTGCGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAACAGGCAGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTCGGACTTTGCATTGTCAGAACTTTGGTTAATAAGATGGGAGGAGAAATCAAGGTTATCAAAAGGGATGGTCCAGGAACTCTGATGCGATTGTCCCTGCATCTAAGTGCACCCATGGATGCCACAGAACAACACTGTCAAATGGATTTTGCAGACTATGGCTTAGTGGTCTTGCTGGCACTGCACGGGAGCATGAGTCGATTAATCACATCTAAATGGTTACAGAAAAATGGGGTGTGCACTATGGAGGCATCGGAATGGAATGGACTTACACAAACTCTAAGAGAACTCTTTCGTGCAAGAAGTTTAGTCGAAAATAATGGATTTGATGTACATTATCCAATAAATGAGGCTTTCAAGGGTAAATTACTCAAGATACAAGAAATGAGGAACCCAACTTTTGTCATTGTTGTCGACATAGGGCTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTTAAGTTCCTTCACAAGTACTTTGGGAGAGCAAAGTTCGCATGGCTGCTAAATCATGACACCTCCAATTCAGTAAAGATGGAACTGCGTAGTAAAGGACATGTATTGATGGGTAACAAACCGCTTTACAAGGCAAAATTGGTTCATATTTTGGAAGCTATCATACAAGAGAGAAATCTTGAgttgcaaaagaaaagtacTGCTGCTCCAAAAATTACAACCAAAGAGGGTGATCCACATGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTACTAGCTCTGATGGTTCTGACATATCTGAAATGGGCGGTCCTATTCACAGCACTGCAAATGGagataaacaaagagaaaacattGCAAAATCATGTTCATCATCACAATGCCAGAGCATAAACAACTGCCTAGTTGGATTAACCGATGAATATCCAGAAGATAATAATTCAAGGAAAGAGGAGTCATGTCAAGCCAGCCTCAATTCCCATGATGTCACTGAAGATgcacaacaaaaattaatgtcCACTAAACAAGCATCCTTTTCAACAGAAACTCAATGCGAAAATTCTGAAGGGAGTGAAATACATAGGACGAATAGCTCAAATAAAGCGGTGAGTGGGAAGAAACCTCTTGAAGGCTTAAGGATCTTGCTTGCAGAAGATACTCCAGTGATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCTACAGTTGTTGCTGTTGGTGATGGGCTGCAGGCAGTGGAGGCTCTGAATTGCATGCTTGACGACGAAGATTGTAGAAGGGGAATAGAAGTCTCCAGTGGCCCTGCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCAACAAAAGCAATCAGGAAATCAGAAGTGGGTTCTGGCTTGCACATTCCCATTGTTGCTCTTACGGCCCATGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTGGGCATGGATGCTTATTTAACAAAACCAATTGACTTCAAGTTAATGGTGTCCACCATTCTTTCACTCACCAGAAGACCTTCTTG 3719 0.4103 MAENKDECSCESSVCSPSSSSPMGSKCRYLFDRIWGLGTCCNKSSTPHGRRIFHRDVEKEEFQYASTHCLSSYYSVFVVRLAIMAMLAILIGLLTILTWHFTKIYTTKSLNSLAYGLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRKYSNPANQAQQVELYESMRAVTWALFASRRALNSITINYKNGFVQAFHRNLKDNNTFYIYSDLANYSIGASGSNDINSLSTHQAWNDKAIHGNNSAKWYREPLDPLSGEKIGKATEIAPDDLINIAGLSQVPDGVASWHVSVSKFTDSPLLSAALPVWDASNKSIVAVVGVTTALYSVGQLMKELVEFHSGHMYLTSQEGYLLATSTDAPLLTNSTKPPKLKMAVDSEDDIIRSGAEWLQRNYGNKFPRSHEVHAENAKLGHQQYYIDSFFLNLKRLPLVGVILIPRKYIMGEVDERALKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTASGHIILRGWCENPYSWSDNANFPLDQKKSRSAQKIRVKQHENHVKKASKKDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVIKRDGPGTLMRLSLHLSAPMDATEQHCQMDFADYGLVVLLALHGSMSRLITSKWLQKNGVCTMEASEWNGLTQTLRELFRARSLVENNGFDVHYPINEAFKGKLLKIQEMRNPTFVIVVDIGLLDLSTDIWKEQLKFLHKYFGRAKFAWLLNHDTSNSVKMELRSKGHVLMGNKPLYKAKLVHILEAIIQERNLELQKKSTAAPKITTKEGDPHEFLEIDSTHFDATSSDGSDISEMGGPIHSTANGDKQRENIAKSCSSSQCQSINNCLVGLTDEYPEDNNSRKEESCQASLNSHDVTEDAQQKLMSTKQASFSTETQCENSEGSEIHRTNSSNKAVSGKKPLEGLRILLAEDTPVIQRVATIMLEKMGATVVAVGDGLQAVEALNCMLDDEDCRRGIEVSSGPAYDLILMDCQMPKMDGYEATKAIRKSEVGSGLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDFKLMVSTILSLTRRPS 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00875 1238 SMART HisKA_10 505 571 IPR003661 GO:0000155|GO:0007165
Bva08g00875 1238 MobiDBLite consensus disorder prediction 1062 1091 - -
Bva08g00875 1238 SMART HKATPase_4 618 770 IPR003594 -
Bva08g00875 1238 Gene3D - 573 771 IPR036890 -
Bva08g00875 1238 Pfam Response regulator receiver domain 1101 1229 IPR001789 GO:0000160
Bva08g00875 1238 ProSiteProfiles Response regulatory domain profile. 1100 1234 IPR001789 GO:0000160
Bva08g00875 1238 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 560 766 IPR036890 -
Bva08g00875 1238 CDD REC_hyHK_CKI1_RcsC-like 1101 1230 - -
Bva08g00875 1238 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 618 768 IPR003594 -
Bva08g00875 1238 PRINTS Bacterial sensor protein C-terminal signature 713 723 IPR004358 GO:0016310|GO:0016772
Bva08g00875 1238 PRINTS Bacterial sensor protein C-terminal signature 730 748 IPR004358 GO:0016310|GO:0016772
Bva08g00875 1238 PRINTS Bacterial sensor protein C-terminal signature 695 709 IPR004358 GO:0016310|GO:0016772
Bva08g00875 1238 ProSiteProfiles Histidine kinase domain profile. 512 770 IPR005467 -
Bva08g00875 1238 SUPERFAMILY CheY-like 1097 1235 IPR011006 -
Bva08g00875 1238 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 1235 - -
Bva08g00875 1238 CDD HisKA 506 567 IPR003661 GO:0000155|GO:0007165
Bva08g00875 1238 Gene3D - 1077 1234 - -
Bva08g00875 1238 Pfam His Kinase A (phospho-acceptor) domain 506 571 IPR003661 GO:0000155|GO:0007165
Bva08g00875 1238 PANTHER OSMOSENSOR HISTIDINE KINASE 23 1235 - -
Bva08g00875 1238 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 492 572 IPR036097 GO:0000155|GO:0007165
Bva08g00875 1238 SMART REC_2 1099 1230 IPR001789 GO:0000160
Bva08g00875 1238 Gene3D - 493 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00875 Bva-Chr8 4491312 4498251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00875 21 1235 Histidine Kinase Gene Family AT2G17820 64.183 0.0 1582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva08g00875 HATPase_c 7.4e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00875 - - gmx:100814068 1914.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00875 08 4491312 4498251 Bva11g01509 11 14375457 14381737 BWGD
Bva08g00875 08 4491312 4498251 Bva08g00875 08 4491312 4498251 ECH