Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00865 ATGGAAGACGCTGAAAAACTACCGTTGCCTGGTGCTTTCCTTGACTTTCTGAAGGAGAATGGGCTTGACCCTTCGATTTATACCGCAATTGATTCCATTCCACGATACATTCGATTGAAACCTGGGTGTGAAGCTTATATTGAAGAGGTTCAAGCAGAGATGAAATGTAAACTCCAGAAAGTGGATTGGTTGGCAGGATTTTACTCTATTCCACCTGATATTCAGATTGCTAGCTCAAAGGCATACCAAGAAGGGAAGATATATGGAATTGATGCATCTTCCGGAGCTGCTGTTATGGCTTTGAATATATCAGAAGGAGATCATGTCCTTGATCTATGTGCTGCTCCCGgtGCTAAACTTTGTATGATATTAGACCTTCTTGGGAATTCTGGCTCCTTAACTGGAGTAGATGTAGCAAGACACCGTTTAGCAGCATGCAGAACAATGTTGCAGAAATATACACTGGGTGATCGATGCAGGCTTTTTGTTGCTGATGGAACAACATTTTCACTGGTTCCTGCAGGATTTCATTCAGCCTGTAATTCatATCAGTTGGAAGAAAAAGTAGATGTATTTAAGGAGTGGACATCCAGAAGACCATGGAAAGAGCGGCAAAAGGCAAAAAAAGGTGGTCCTCCACTGTTGGCCTCTAGATCTCAGCCTCCAGAACTCATATATTATGGGCAGCATTCTGGAGTTGTTGGACTAACTAAAGGAGAATTATACAAGACTTTATCTGAGAATGAGATTGGGAGCTGTGGCTATGACAAGGTCCTTGTGGATGCAGAGTGCACTCATGATGGTTCATTTAAACATATCCAAAAATTTGAACATTGGGGTTGGAAAACTCTCCAGCGTCGTGTACTAGATGCAGAGAGAACTGATAGCTTGCATGTTCTTCAGTTGGATCTCCTAACTAATGGTTTCAGACTACTGAAAGTAGGAGGAACGCTAGTATATAGCACTTGCAGCTTAACTTTTGCTCAAAATGAAGATGTGGTAGATCAGTTCCTGAAGGAAAACAGATCAGCTGAATTGCAAGATATAGAATCTGCTAGAGGTTGGCCTTGCAAGAATGGTCGGATACTAAAAACACTGCGCTTTGATCCACTAACGTCTTCTGCTGGGAAATGGCTGGGATTTGTGACAGCCATATGGGTGCAAGCAATATGTGGCAACAACTACACGTTTGCCAATTATTCAGATGCATTGAAGATCCTAATGGGTCTAACCCAAACGCAGCTTAACAATCTCTCTGTTGCTAAAGATGTCGGCAAGGCTTTTGGGATCTTCTCTGGTCTTGCCTCTGATTGTTGGTCTACTTCAACCATACTCATCATTGGAGCCATTGAAGGGCTTATCGGCTATGGTGTTCAATTGCTTGTTGTTAGCCAGAGAATTAGTCCTATCCCTTATTGGCTGATGTGTGTGTTTTTGTGTTTGGGAGGAAACAGTTCAACGTGGTTGAACACGGCAGTGCTTGTAACTTGCCTGAGAAATTTCCCCAAAAACCGTGGCCCTGTCTCTGGGATTCTCAAGGGTTATGTAGGGCTCAGCACTGCAATCTTCACAGACATATGCACTGCTCTGTTCTCCTCTGACCCTTCTACCTTTCTGCTAATGCTTGCCATTGTTCCTGCGGTTATTTGCTTCATTGCTGTTCTCTTTCTTCGTGAATCTCCTCCAGCTTCCACCTttgcagaagaaaaacaagaaacccAATTCTTCAATATATTCAATATAGTTGCTATCACAGTAGCAGTCTACCTCTTGGCCTTTGACATCACTGGACGCCATGGCCATGTTCTTTCCTTGGTCTTCACTGCAGGACTTCTTATCCTCCTGGCCTCACCACTTCTTGTTcctttatattcaattttcttccaaTCGAATCCAAATCCTGACATGGAACAACAGATTAAGGAACCATTGCTTGGCCAAAATGGTTCACTGCAAACGGAAGAGGAGCAGCAAAATCTGCCAGCAAGTTCTGGCATCAAAGTGGAGGAAGTTGAAAGAAAGCGAAAACCCTTGATAGGGGAGGACCACAACATCCTTGAAATGTTAAAAACTTTGGATTTCTGGGTTTTGTTCGTGTCATTTCTTTGTGGCGTGGGAACAGGACTTTGTGTGATGAACAACATGGGACAGATAGGATTAGCACTAGGTTACTCCGATGTATCCatattcatttcattcatCAGCATATGGGGCTTCTTTGGACGCATTTTTTCTGGCTCACTCTCAGAATACTTCATCAGAAAATCAGCAATGCCAAGGCCACTTTGGAATGCTGCTTCTCAAATTCTCATGTGTCTGGGATACGTTGCAATGGCCATGGCCCTGCCAGGATCACTCTACATTGGGTCAATGATAGTAGGAATATGCTATGGAGTCCGTTTTGCTGTGACAGTGCCGATAGCTTCAGAACTATTCGGCCTCAAATACTTTGGTTTATTATACAACATTATCATTCTCAACCTTCCGCTGGGTTCCTTCATCTTCTCCGGTCTCATTGCTGGTTTTCTGTATGATGCACAAGCCACAAGTGTACCTGGAGGGGGGAACGTTTGCATTGGGCCAAATTGTTATATGCTTGTGTTTGTGATAATGGCCATTACTTGTGTTCTGGGATGTGGGTTGGACTTGTTTCTGGCACTTAGAACAAAGAATGTTTATTCCAAGATACAGTTAGAGAAGAGTTTGGTCACTTCAACACCGTA 2723 0.4242 MEDAEKLPLPGAFLDFLKENGLDPSIYTAIDSIPRYIRLKPGCEAYIEEVQAEMKCKLQKVDWLAGFYSIPPDIQIASSKAYQEGKIYGIDASSGAAVMALNISEGDHVLDLCAAPGAKLCMILDLLGNSGSLTGVDVARHRLAACRTMLQKYTLGDRCRLFVADGTTFSLVPAGFHSACNSYQLEEKVDVFKEWTSRRPWKERQKAKKGGPPLLASRSQPPELIYYGQHSGVVGLTKGELYKTLSENEIGSCGYDKVLVDAECTHDGSFKHIQKFEHWGWKTLQRRVLDAERTDSLHVLQLDLLTNGFRLLKVGGTLVYSTCSLTFAQNEDVVDQFLKENRSAELQDIESARGWPCKNGRILKTLRFDPLTSSAGKWLGFVTAIWVQAICGNNYTFANYSDALKILMGLTQTQLNNLSVAKDVGKAFGIFSGLASDCWSTSTILIIGAIEGLIGYGVQLLVVSQRISPIPYWLMCVFLCLGGNSSTWLNTAVLVTCLRNFPKNRGPVSGILKGYVGLSTAIFTDICTALFSSDPSTFLLMLAIVPAVICFIAVLFLRESPPASTFAEEKQETQFFNIFNIVAITVAVYLLAFDITGRHGHVLSLVFTAGLLILLASPLLVPLYSIFFQSNPNPDMEQQIKEPLLGQNGSLQTEEEQQNLPASSGIKVEEVERKRKPLIGEDHNILEMLKTLDFWVLFVSFLCGVGTGLCVMNNMGQIGLALGYSDVSIFISFISIWGFFGRIFSGSLSEYFIRKSAMPRPLWNAASQILMCLGYVAMAMALPGSLYIGSMIVGICYGVRFAVTVPIASELFGLKYFGLLYNIIILNLPLGSFIFSGLIAGFLYDAQATSVPGGGNVCIGPNCYMLVFVIMAITCVLGCGLDLFLALRTKNVYSKIQLEKSLVTSTP 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00865 907 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 369 902 - -
Bva08g00865 907 CDD MFS_Mch1p_like 376 879 - -
Bva08g00865 907 Pfam 16S rRNA methyltransferase RsmB/F 250 370 IPR001678 GO:0008168
Bva08g00865 907 Pfam 16S rRNA methyltransferase RsmB/F 98 175 IPR001678 GO:0008168
Bva08g00865 907 PRINTS RNA (C5-cytosine) methyltransferase signature 315 331 IPR023267 GO:0001510
Bva08g00865 907 PRINTS RNA (C5-cytosine) methyltransferase signature 81 95 IPR023267 GO:0001510
Bva08g00865 907 PRINTS RNA (C5-cytosine) methyltransferase signature 110 120 IPR023267 GO:0001510
Bva08g00865 907 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 17 356 IPR029063 -
Bva08g00865 907 SUPERFAMILY MFS general substrate transporter 396 892 IPR036259 -
Bva08g00865 907 Pfam Nodulin-like 377 623 IPR010658 -
Bva08g00865 907 Gene3D MFS general substrate transporter like domains 667 898 IPR036259 -
Bva08g00865 907 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 22 389 IPR001678 GO:0008168
Bva08g00865 907 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 369 902 - -
Bva08g00865 907 Gene3D MFS general substrate transporter like domains 382 572 IPR036259 -
Bva08g00865 907 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 9 27 IPR023269 -
Bva08g00865 907 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 276 295 IPR023269 -
Bva08g00865 907 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 135 152 IPR023269 -
Bva08g00865 907 Gene3D Vaccinia Virus protein VP39 14 381 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00865 Bva-Chr8 4448991 4455188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00865 377 900 Nodulin-like Gene Family AT4G34950 63.352 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00865 - - rcu:8260661 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00865 08 4448991 4455188 Bva08g00865 08 4448991 4455188 ECH