Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00861 ATGGCGGAAGAGAGATTGACCGGTGAGGTTCTCTGGTTTCGCGATTCTAAGGGTTTTGGCTTCATCAAGCCGGACGACGGAGGAGAAGATCTCTTTGTTCATCAGTCCTCCATCAAATCCGATGGCTATCGTACCCTCGTAGTAGGCGATCGCGTCGAGTTCTTGGTGGCTTTCGGTGAAGACGGAAAATCCAAAGCCGTTGATGTCACTGGCCCCAATGGAGTTCCTCTTCAGTCTAAGAAAGATACTTACGGTGGCGGCGGTGGCCGCGGCGGGGGTGGATATGGCTTTAGCGGTGGATGGAGAAGCGGGGATAGGCGCAACGGTGGTGGTGGCTGTTATCACTGCGGTGATTTTGGGCACATAGCCAGGGATTGCAATGCTGGTGGCGGTACTGGCGGCGGTGCTTGTTATAATTGTGGTCAGTTTGGACACTTGGCGAGGGATTGCTCTCGCCCAAATAACAGCGGCGGTGGCAATGGTGCTTGCTATTCCTGTGGTGAAGTTGGGCACATGGCGAGAGACTGCACCAACGGAACCGGTGGTGGCGGTGGCAGCGATGGACGTTGCTTtaaatgtggagaagttggccACATGGCGAGGGATTGCAGCAAGGAAAGCGGTGGAAGGTATGGCGGTGCTGGTGGCGCAGCCAGACAAAACACTTGCTTTAATTGTGGGAAAGCTGGGCATTTTGCGAAAGAGTGCACCGAGCCATCCGGTTG 725 0.5379 MAEERLTGEVLWFRDSKGFGFIKPDDGGEDLFVHQSSIKSDGYRTLVVGDRVEFLVAFGEDGKSKAVDVTGPNGVPLQSKKDTYGGGGGRGGGGYGFSGGWRSGDRRNGGGGCYHCGDFGHIARDCNAGGGTGGGACYNCGQFGHLARDCSRPNNSGGGNGACYSCGEVGHMARDCTNGTGGGGGSDGRCFKCGEVGHMARDCSKESGGRYGGAGGAARQNTCFNCGKAGHFAKECTEPSG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00861 241 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 SUPERFAMILY Retrovirus zinc finger-like domains 129 179 IPR036875 GO:0003676|GO:0008270
Bva08g00861 241 Gene3D - 99 156 - -
Bva08g00861 241 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 Pfam Zinc knuckle 162 178 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 Pfam Zinc knuckle 189 205 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 Pfam Zinc knuckle 221 238 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 184 - -
Bva08g00861 241 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Bva08g00861 241 Gene3D - 6 84 IPR012340 -
Bva08g00861 241 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 1 184 - -
Bva08g00861 241 ProSiteProfiles Zinc finger CCHC-type profile. 223 238 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 Gene3D - 157 183 - -
Bva08g00861 241 Gene3D - 216 241 - -
Bva08g00861 241 Gene3D - 184 211 - -
Bva08g00861 241 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Bva08g00861 241 ProSiteProfiles Zinc finger CCHC-type profile. 163 178 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Bva08g00861 241 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Bva08g00861 241 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Bva08g00861 241 PANTHER COLD SHOCK DOMAIN PROTEIN 2 128 239 - -
Bva08g00861 241 SUPERFAMILY Retrovirus zinc finger-like domains 99 126 IPR036875 GO:0003676|GO:0008270
Bva08g00861 241 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 SMART c2hcfinal6 222 238 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 SMART c2hcfinal6 189 205 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Bva08g00861 241 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Bva08g00861 241 SUPERFAMILY Retrovirus zinc finger-like domains 208 239 IPR036875 GO:0003676|GO:0008270
Bva08g00861 241 SUPERFAMILY Retrovirus zinc finger-like domains 179 206 IPR036875 GO:0003676|GO:0008270
Bva08g00861 241 SMART csp_8 7 72 IPR011129 GO:0003676
Bva08g00861 241 ProSiteProfiles Zinc finger CCHC-type profile. 189 205 IPR001878 GO:0003676|GO:0008270
Bva08g00861 241 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 128 239 - -
Bva08g00861 241 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00861 Bva-Chr8 4427266 4428249 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bva08g00861 CSD 2.3e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00861 K09250 - gmx:106796585 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00861 08 4427266 4428249 Bva08g00861 08 4427266 4428249 ECH