Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00856 ATGGATCAGTGGAAACCTGAGGATTTGGCTAAAGCAGTGCCCGTTGTAGATTTAGCTCCTTGTACTTCCCTGCAACCTCATCCTGTGTCCTCTGGTCGTTTGCAGAACTCGCATCCTGATGTCAGGCAGAGACCTGAAGTGGAAGCACAGGATCCAATTGCTGCAAGAAAAGTTCAGAAGGCCGACCGAGAGAAGCTGAGGAGGGATCGACTAAATGAACATTTCCTGGAGTTGGGAAACGCATTAGACCCGGATAGGCCAAAGAATGATAAGGCAACCATCCTTACAGATACAATCCAAGTGCTAAAGGATTTAAATGGTGAAGTCAATAGACTAAAGACTGAGCATGCAGCACTATCTGAAGAATCGCGTGAACTGATGCAAGAGAAGAATGAACTCAGAGAAGAGAAGGCATGCTTAAAATCTGACATTGACAATCTTAACGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATGGACTGCAATTGACCATTCTGTTGGCATGGCCCCACCTTATTCATATCCAGTTCCAATAGCCATTCCTCCAGGTCCAATATCCATTCATCCATCACTTCAGCCATTTCCCTTCTTTGGAAATCAAAATCCGGGTCCAATTCCTAATCCTTGCTCAACATACGTCCCATTCTCAGCTCCAGTAAATCCCCCTGTTGAGCAGCCATCTGCCCAGTATGCCTCCACATCCCACATTTCGAGCAAACAAGAATCCAGAAGCAAGTCACCAGATCATAAAAGGCCCAGCAATGCTGAAAGATGCAGCGAGTCTCCTGATGTGGCTACAGAGCTTGAACTTAAGATGCCTGGATCATCAGCCCATCGGGATTCGTCTTCTGGAGGAAAGAAGGGCAAGCATTCACAtaggaaagagagaaatatcACAGATAGGAGTGCGTCAAGCAGGTATTCTTCATCTCAAGGTTTTCAAGATAGCTCTAACAGTGTGGGTGACACACCAAAGCCCGATAACTG 992 0.4567 MDQWKPEDLAKAVPVVDLAPCTSLQPHPVSSGRLQNSHPDVRQRPEVEAQDPIAARKVQKADREKLRRDRLNEHFLELGNALDPDRPKNDKATILTDTIQVLKDLNGEVNRLKTEHAALSEESRELMQEKNELREEKACLKSDIDNLNAQYQQRVRIMFPWTAIDHSVGMAPPYSYPVPIAIPPGPISIHPSLQPFPFFGNQNPGPIPNPCSTYVPFSAPVNPPVEQPSAQYASTSHISSKQESRSKSPDHKRPSNAERCSESPDVATELELKMPGSSAHRDSSSGGKKGKHSHRKERNITDRSASSRYSSSQGFQDSSNSVGDTPKPDN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00856 330 MobiDBLite consensus disorder prediction 224 242 - -
Bva08g00856 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 105 IPR011598 GO:0046983
Bva08g00856 330 Pfam Helix-loop-helix DNA-binding domain 56 105 IPR011598 GO:0046983
Bva08g00856 330 MobiDBLite consensus disorder prediction 24 38 - -
Bva08g00856 330 CDD bHLH_AtILR3_like 60 134 - -
Bva08g00856 330 PANTHER TRANSCRIPTION FACTOR BHLH11 31 329 - -
Bva08g00856 330 MobiDBLite consensus disorder prediction 23 51 - -
Bva08g00856 330 MobiDBLite consensus disorder prediction 243 259 - -
Bva08g00856 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 125 IPR036638 GO:0046983
Bva08g00856 330 SMART finulus 61 111 IPR011598 GO:0046983
Bva08g00856 330 Coils Coil 95 150 - -
Bva08g00856 330 MobiDBLite consensus disorder prediction 304 330 - -
Bva08g00856 330 Gene3D - 53 156 IPR036638 GO:0046983
Bva08g00856 330 MobiDBLite consensus disorder prediction 222 330 - -
Bva08g00856 330 PANTHER TRANSCRIPTION FACTOR BHLH121 31 329 IPR044579 GO:0003700|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00856 Bva-Chr8 4404467 4406865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00856 46 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.863 1.45e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g00856 HLH 5.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00856 - - csv:101222613 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00856 08 4404467 4406865 Bva08g00856 08 4404467 4406865 ECH