Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00848 ATGGGTGGGACCCAACctgagagagaagagaaggtgTCTTTGGAGCTCAGTGAAGAACTCATTCAGAGTATGGAAGTAGGAATGGCGTTTAAAGACTATAATGGTAAAATTAGTTCGATGGATTTTCACAAGGCGTCGAGTTATCTGGTGACTGCAAGTGATGATGAGTCCATTCGTCTCTATGATGTCACCAGTGGAACATGTTTGAAGACAATAAATAGCAAGAAATATGGTGTTGATCTAGTTTGCTTCACATCTCATCCTACGACTGTAATCTACTCATCAAAAAATGGTTGGGATGAATCTTTGAGGCATCTATCTTTGCATGATAACAAGTACTTGAGATATTTCAAAGGTCACCATGACAGGGTTGTCTCTCTTAGCTTGTGCTCTCGCAATGACTGTTTTATATCCGGCTCTCTTGATCGATCTGTTTTACTCTGGGACCAAAGGCTAGACAAGTGCCAGgGACTCATACGTGTACAAGGGAGGCCTGCAATATCATATGACGATCAAGGGCTAGTCTTTGCAATTGCCTTTGGGGGATACATTAGAATGTTTGATGCTCGCAATTATGAAAAGGGTCCCTTTGACATATTTTCTGTAGGGGGAGATATTTCCGATGCAAATATTGTGAAGTTTAGCAATGATGGGAGACTCATGCTTTTAACAACTGCTGGTGGACATATTCATGTGCTCGATTCATTTCGTGGCACACTGTTATCCACATATAATGTCACACCAGTCTCCTCTAATTCCACACTAGAAGCTTCTTTCAGCCCTGAGGGAATGTTCGTGATATCAGGTTCAGGCAATGGCAGCGTCTATGCTTGGAGTGTTCGGAGTGGGAAAGAAGTTGCAAGCTGGATGAGTGCCACTTCTGATACTGGACCTCCTGTTATTAAGTGGGCTCCTGGAAGTCTTATGTTTGCAACCGGGTCTTCTGAGTTGTCATTTTGGATTCCAGATTTATCAAAACTGGGGGCTTATGTTGGAAGAAAGACAACCATACAAGACGAAATGGCAGCTATGATATGTAAATTTTCTCCTCCGGGTGGACCTTCGATACTTCAGCGGCAGAGCAGCCTCCATATTAGTTCAACAAGCGAGTGCTGTTCTCTGTA 1124 0.4217 MGGTQPEREEKVSLELSEELIQSMEVGMAFKDYNGKISSMDFHKASSYLVTASDDESIRLYDVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRHLSLHDNKYLRYFKGHHDRVVSLSLCSRNDCFISGSLDRSVLLWDQRLDKCQGLIRVQGRPAISYDDQGLVFAIAFGGYIRMFDARNYEKGPFDIFSVGGDISDANIVKFSNDGRLMLLTTAGGHIHVLDSFRGTLLSTYNVTPVSSNSTLEASFSPEGMFVISGSGNGSVYAWSVRSGKEVASWMSATSDTGPPVIKWAPGSLMFATGSSELSFWIPDLSKLGAYVGRKTTIQDEMAAMICKFSPPGGPSILQRQSSLHISSTSECCSL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00848 374 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 333 - -
Bva08g00848 374 SUPERFAMILY WD40 repeat-like 30 320 IPR036322 GO:0005515
Bva08g00848 374 PANTHER WD40 REPEAT PROTEIN SWD2 1 333 IPR037867 GO:0048188
Bva08g00848 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 288 IPR001680 GO:0005515
Bva08g00848 374 Pfam WD domain, G-beta repeat 36 62 IPR001680 GO:0005515
Bva08g00848 374 Pfam WD domain, G-beta repeat 113 149 IPR001680 GO:0005515
Bva08g00848 374 Gene3D - 17 321 IPR015943 GO:0005515
Bva08g00848 374 SMART WD40_4 193 234 IPR001680 GO:0005515
Bva08g00848 374 SMART WD40_4 23 62 IPR001680 GO:0005515
Bva08g00848 374 SMART WD40_4 110 149 IPR001680 GO:0005515
Bva08g00848 374 SMART WD40_4 237 279 IPR001680 GO:0005515
Bva08g00848 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 71 IPR001680 GO:0005515
Bva08g00848 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 149 IPR001680 GO:0005515
Bva08g00848 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 30 66 - -
Bva08g00848 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00848 Bva-Chr8 4353497 4356510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00848 27 151 U-box Gene Family AT2G33340 26.984 1.33e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00848 K14962 - gmx:100807825 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00848 08 4353497 4356510 Bva08g00848 08 4353497 4356510 ECH