Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00840 ATGGGAAGAGTGATCCGAGCACAGCGTAAGGGTGCTGGTTCCGTCTTCAAGTCCCACACCCATACTCGCAAGGGTGCTGCTAGATTCCGCAGCCTTGATTTTAGTGAGAGAAATGGATATATCAAGGGAGTAGTTACCGATGTCATTCACGACCCTGGTCGCGGTGCTCCACTGGCCAAGGTCGCTTTCCGCCACCCATTCAGGTATAAGAAGCAAAGTGAGTTGTTCGTTGCTGCCGAGGGTATCTATACTGGTCAGTTCATCTACTGCGGCAAGAAGGCCAACCTTGTCGTTGGTAATGTTTTGCCCCTCAGATCCATCCCTGAAGGAGCTGTTATCTGCAACGTTGAACACCATGTCGGTGATCGTGGTGTATTTGCTAGGTGTTCTGGCGACTACGCTATTGTTATCAGTCACAACCCTGACAACGACACCACTAGGATCAAGCTTCCTTCTGGTGCAAAGAAGATTGTTCCAAGTGGGTGTAGGGCCATGGTTGGCCAAGTTGCAGGTGGTGGGAGGACTGAAAAGCCCCTTCTTAAAGCTGGTAATGCTTACCACAAATTCAAGGTGAAGAGGAATTGTTGGCCTAAGGTTCGTGGTGTGGCTATGAACCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAACACATTGGTCATGCCAGTACGGTCAGGCGTGATGCTCCTCCTGGCCAGAAAGTTGGTCTTATTGCTGCTAAGAGGACTGGTCGTCTTAGGGGGCAAGCTGCTGCAACTGCTGCCAAGTCTGATAAAGTtta 782 0.5064 MGRVIRAQRKGAGSVFKSHTHTRKGAARFRSLDFSERNGYIKGVVTDVIHDPGRGAPLAKVAFRHPFRYKKQSELFVAAEGIYTGQFIYCGKKANLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVISHNPDNDTTRIKLPSGAKKIVPSGCRAMVGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKSDKV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00840 260 Gene3D - 1 86 IPR012340 -
Bva08g00840 260 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Bva08g00840 260 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Bva08g00840 260 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Bva08g00840 260 PANTHER 60S RIBOSOMAL PROTEIN L8 1 259 - -
Bva08g00840 260 Gene3D - 90 169 IPR014722 -
Bva08g00840 260 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Bva08g00840 260 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Bva08g00840 260 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Bva08g00840 260 MobiDBLite consensus disorder prediction 210 230 - -
Bva08g00840 260 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Bva08g00840 260 PANTHER RIBOSOMAL PROTEIN L2 1 259 IPR002171 GO:0003735|GO:0005840|GO:0006412
Bva08g00840 260 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Bva08g00840 260 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00840 Bva-Chr8 4319261 4320862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00840 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 89.922 2.50e-178 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00840 K02938 - mnt:21409345 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00840 08 4319261 4320862 Bva11g01534 11 14519139 14520623 BWGD
Bva08g00840 08 4319261 4320862 Bva08g00840 08 4319261 4320862 ECH