Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00836 ATGAAGCGGCCAAGGAAATCAAACGGGGTTTCGTGGGCTTCTGAAGTTTATCTGTGTCAGGTAAAGCTGTTCTTGTCTGAAGATTGCCCTTCAAAAGTTGGCCAGAAATTTCAAGATCATCTTCAAGCAAAGGCGTCCTTTATGCTGCATTCAAGTCCTAATGAGCCCAATGATCTACCCCCGGGGTTTGAAGGCAATCATTTTGTGAACCAGTCAAAGGATGAACTGTCTCGCATACCTCAGATTAAATGGAAATGCCCACCTCAGTTTGTTTTCAATTATGCCTGGCGTGTTGCAGCTGGTGAAGAGAgtagagagaaagaggatCAAAAGATAAGGGAAATGAGGGTTCTTGAAGCAGTTTATCCTCGCCTTTCTGCGATTCCTCCTTGCCCTTCTGTTTCCTTGGATGTGGAAGAGGAAGATTACGATGATAGCCTGATTCCTCTCGTTCCTTTGATTCCCATTGAAGAAGAGTCCGTGGATATAAACGCTCAAGTGGCATCTGCAGCGACCATCACCCATATGCATCAATATGCATCAGCAACCACAGCACCCATAAGTTCACAATGCAATACCCATGCTACCCTCGCCTCCCCTGCATGTGGTAGAGATGCAGGTTTAGCTGCCATCATGAAGAGTAATGAGCAAGGAGGCATGATTGATATGGATCTACTCGTTAGGATATTTAATGACCCAATACTGATTGAGAAATTGATTTCTGAATATAGAATTGCAGGTACCACTGCGTTGAATCCTGCAATTCCATTTGCTCCAAGGTCTTCGCCTGCACCTGATAAGCCGGCTTCTGGGATTTCACCGATAAGTATGGCGGGTTTATCATCTGCTTCAGTGCCGAAGCCGGCGACGACTTCAGTTTCATCGCTGATGCCTAAATCTGATAAGCCAGCAACTCCATCAGTTCCAATTTCGAAGTCTATGCCTGAGAAACCAGTAACTGTTGTTCCATTCTCAAGGCCTATGCCCGATAAACCAGCAAGTGCATTTCCATTCTCAAAGCCTATGCCTGAAAAGGCATCAACTCCCCCATTTCCATTGCCTCCAGCTACACCTGATATGCACAGGCCGGTAAACAAAAGCATTCACCATTTGTCAAATGGTGTGCTGCCCGCTTTAAATACCCTTCTTCCTCAACAAGACACTGTTTTGGCATCACGGATTAAGCAAGCAGCATCGTTGACTTCCATTTCATCCAATGAAACGAACATGGTGTCCTTACCTTCAGCTGGTGGGAACTTGAATTCTGTTGCAAATCAGGTGCCACCCACTGTAAGTACAATGCATTACCAACCAAGTACGAGTTCAACTTTTGCCATGAAGGAAGCTTATCCTGTGAAGGATGCCAACTATTATAAGAACCTCGTTAGGCAACATGGTACAGATAAGCAAGATATGCTGGACTCACAAATAGGTAGCAGTCATAATAACTTCCAAGATTTGAAACCGGTACATAACCATAAACCAGGGGAAGTGAAATTCAAAACTCAGAAACCTTGCTTATACTTTAACAGCTCCAGGGGGTGCCGAAATGGTTCCAATTGCCCCTATCAGCACGACATGTCTGTTCCGTGGGGAGCTGGTAGTGTCTTAGGGTCCCAGAATcataaaagaatgaaacttGGACCAGAAATTAAGGGGAAAACATA 1667 0.4415 MKRPRKSNGVSWASEVYLCQVKLFLSEDCPSKVGQKFQDHLQAKASFMLHSSPNEPNDLPPGFEGNHFVNQSKDELSRIPQIKWKCPPQFVFNYAWRVAAGEESREKEDQKIREMRVLEAVYPRLSAIPPCPSVSLDVEEEDYDDSLIPLVPLIPIEEESVDINAQVASAATITHMHQYASATTAPISSQCNTHATLASPACGRDAGLAAIMKSNEQGGMIDMDLLVRIFNDPILIEKLISEYRIAGTTALNPAIPFAPRSSPAPDKPASGISPISMAGLSSASVPKPATTSVSSLMPKSDKPATPSVPISKSMPEKPVTVVPFSRPMPDKPASAFPFSKPMPEKASTPPFPLPPATPDMHRPVNKSIHHLSNGVLPALNTLLPQQDTVLASRIKQAASLTSISSNETNMVSLPSAGGNLNSVANQVPPTVSTMHYQPSTSSTFAMKEAYPVKDANYYKNLVRQHGTDKQDMLDSQIGSSHNNFQDLKPVHNHKPGEVKFKTQKPCLYFNSSRGCRNGSNCPYQHDMSVPWGAGSVLGSQNHKRMKLGPEIKGKT 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00836 555 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 547 - -
Bva08g00836 555 ProSiteProfiles Zinc finger C3H1-type profile. 500 528 IPR000571 GO:0046872
Bva08g00836 555 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 547 - -
Bva08g00836 555 MobiDBLite consensus disorder prediction 280 314 - -
Bva08g00836 555 MobiDBLite consensus disorder prediction 280 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00836 Bva-Chr8 4306304 4311570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00836 81 152 Homeobox Transcription Factor Family AT4G02560 44.444 1.53e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva08g00836 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00836 - - gmx:102661587 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00836 08 4306304 4311570 Bva11g01537 11 14528264 14533288 BWGD
Bva08g00836 08 4306304 4311570 Bva08g00836 08 4306304 4311570 ECH