Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00833 ATGAGAACTCGAAACTCTGATTCTTCGAAATCAGCCACTGTTAAGAAGACACCGCCGGCGAGGAAATCCGCCACTAAAACACCCACGACCCCTTCTAATTTGGCTGGAGAATCCGCTACTCCGAAATCCGCCGACACAAAGCGCACGGCCGCGACCAAAACGAGACAGGTGAAGAAGAACGAGCTCTCACTCAAATCAAGCACAACCGCCGATTCAAAAACAGAGCTATCATCTGACACTGTAGCGGAGGAGGCAAAGCCCTCGCCTGGTGGTTCAGTTACAAAAGTTGCTACAACTACAAAATCAGCAGTGAAGAGAACACCCGGGAGAACTAGAACACCAACTAGAGCAGGTTCCACCCCCAAGCCAGCAGAACAAGTGGAGATAGGAGCTGATGAAACTCCAAAAGTAGATAATTTTAAGGCAGCAGAGAAAGATGAAGAGCCTCAAAATGTTGAAGTAGCCAATGCGGGTGTCATTGAGAGTGAAAAAGAGGGGGAACAAGACAATGAGGTTCTTGGGCAACCAGcagagaaagaacaaaagcCCATCGAAGTGGATGAACCTGTATTGGAAAATGTTTGTGAATcagtagaaaaggaaaaagacatAGTGGAAATTGAAATATGTACTTCTCATGATTCATACAATTCTTTGGAGCTAGAAAAACCAACCATTATGGAGCTTGCTAAACCTGCGGAGGATGAAGATTCTGCTGGTGCCAAGGTAGCAGAGAAGGCACAGGAAGAGGAGGgagaaaaggcaaaaaaagaatcaaaggaAGAGGAGACAAATAATATTGGAGATAAAGAGGCATGCAATACTGAGTTTATTAGCATTGAAGAGAAAGATCAGTTAAAGAAAGGAGATGGTAAACCTGAAACGGGTAATATTGGTGATGATGAAGGATTGCAAGGGTGTAATGAGAAGTTGGATCTTGGAGAACAGGGTGACGAGGATCTTATTGAGGATTATTCAGAGGAGACTCCTGAAGAAACTGAGACATGGGAAGAGGAGCGCAGGGAATTGACTGCCATTGCAAAGGAGCGCAAGATTAAGAAAGAACATGAGATATTTGTGGGAGGCCTGGATCGTGATGCCACGGAGGAAGACCTGAGAAAGGTGTTTGAGAGGATTGGGGAGGTAGTTGAAGTCAGGTTGCATAAAAATGGTTCAACCAACAAAAATAAGGGCTATGCTTTTGTAAAGTTTGCTGATAAGGAACATGCTAAAAAAGCTTTGTCAGAAATGAAAAACCCTGTTATACATGGTAAGCGATGTGGCACAGCACCAAGTGAAGACAACGATACGTTATTCTTGGGAAATATTTGTAATACATGGACAAAAGAAGCTATTAAACAGAAGTTGAAGGATTATGGTGTTGAAGGTGTTGAAAAAATAACCCTTGTCTCAGATGTTCAACATGAAGGTTTGAGCCGGGGCTTTGCATTCCTTGAGTTCTCTTGTCACGCTGATGCCATGATGGCATATAAGAGACTTCAAAAGCCTGATGTCATCTTCGGCCATGCTGAGAGGACTGCTAAAGTAGCCTTTGCTGAACCCTTACGTGAGCCAGATCCAGAGGTAATGGCACAAGTAAAGTCTGTTTTTGTTGATGGTCTTCCTCCTCACTGGGATGAAGATCGTGTAAGGGAGCAGTTTAAAGGTTTTGGTGAAATTGTACGAATTGTTCTAGCACGGAATATGTCTACTGCTAAGAGGAAAGATTTTGGGTTTGTTGATTTTGCAACTCATGAAGCTGCTGTAGCTTGCGTTGATGGTGTAAATACCTCTGAATTGGATGATGGGGCATCAAAgATGAAAGTGAGGGCTAGGCTTTCAAATCCTTTACCCAAAACACAGGCTGTCAAAGGTGGCATGTGTGGTGGATTCCGAATCGGTCATGCCAGTACTGGAGGCTTTCCAAGATTTGGAAGGGGTTTTGGGCGCGGAGGGCATTCCTCCAACTGGGGAAATTTCAGTAGGGACCGGAATAATTATCATGGTGGACGCAGTCAAATTGGAAGAATGAGTTTCCGGAATGcctttgattttaataatgCACATCCAGATTTTCATCAGAGGCAATATGATCCAAGAGGGGAAAGAAGGGGGCCTCTTAGGGGTGGACATTATGCAGGTGGTCGAGGTGCTGCCATTGCTGGTCCCCCTGGACCTTATTATGATAGAGCATGGTATGGTGCTCCTGAGAGAGGCCCGGCTGAGCCTATTCTCTCAAGGAGGCCATATTCCCCTGAAGGACAGTATGGTAGGCCTTCTATGGGAAGGCATTTTGATGATCCGTATCTTTATGAAGACAATGCACATGGGGTGAAACGGCCATTTTATATGACTGACCCAGATCCTGATTACATGGGGCCTAGCAGATTTCGTCCCCGATTGGATTATACAGATCCTGCTTTATTTCGTCATGGATCTCAATATCATGATTCTTTTGGGGCTGGAAGCAGACAGTATCCACACGATTATTATGGTCCTGATTATGGTGGAGGTCCTTATTCATCTTTCTATGGGGGTAATAGTTCGTATGGACGTGGATACTACTATTA 2570 0.4335 MRTRNSDSSKSATVKKTPPARKSATKTPTTPSNLAGESATPKSADTKRTAATKTRQVKKNELSLKSSTTADSKTELSSDTVAEEAKPSPGGSVTKVATTTKSAVKRTPGRTRTPTRAGSTPKPAEQVEIGADETPKVDNFKAAEKDEEPQNVEVANAGVIESEKEGEQDNEVLGQPAEKEQKPIEVDEPVLENVCESVEKEKDIVEIEICTSHDSYNSLELEKPTIMELAKPAEDEDSAGAKVAEKAQEEEGEKAKKESKEEETNNIGDKEACNTEFISIEEKDQLKKGDGKPETGNIGDDEGLQGCNEKLDLGEQGDEDLIEDYSEETPEETETWEEERRELTAIAKERKIKKEHEIFVGGLDRDATEEDLRKVFERIGEVVEVRLHKNGSTNKNKGYAFVKFADKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVEKITLVSDVQHEGLSRGFAFLEFSCHADAMMAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEVMAQVKSVFVDGLPPHWDEDRVREQFKGFGEIVRIVLARNMSTAKRKDFGFVDFATHEAAVACVDGVNTSELDDGASKMKVRARLSNPLPKTQAVKGGMCGGFRIGHASTGGFPRFGRGFGRGGHSSNWGNFSRDRNNYHGGRSQIGRMSFRNAFDFNNAHPDFHQRQYDPRGERRGPLRGGHYAGGRGAAIAGPPGPYYDRAWYGAPERGPAEPILSRRPYSPEGQYGRPSMGRHFDDPYLYEDNAHGVKRPFYMTDPDPDYMGPSRFRPRLDYTDPALFRHGSQYHDSFGAGSRQYPHDYYGPDYGGGPYSSFYGGNSSYGRGYYY 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00833 856 MobiDBLite consensus disorder prediction 1 136 - -
Bva08g00833 856 MobiDBLite consensus disorder prediction 160 188 - -
Bva08g00833 856 CDD RRM_SF 536 610 - -
Bva08g00833 856 Gene3D - 307 430 IPR012677 -
Bva08g00833 856 MobiDBLite consensus disorder prediction 92 120 - -
Bva08g00833 856 MobiDBLite consensus disorder prediction 1 47 - -
Bva08g00833 856 CDD RRM_SF 358 426 - -
Bva08g00833 856 CDD RRM_SF 438 501 - -
Bva08g00833 856 Gene3D - 521 680 IPR012677 -
Bva08g00833 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 434 IPR000504 GO:0003723
Bva08g00833 856 MobiDBLite consensus disorder prediction 61 76 - -
Bva08g00833 856 PANTHER NUCLEOLIN-LIKE ISOFORM X1 299 849 - -
Bva08g00833 856 MobiDBLite consensus disorder prediction 231 297 - -
Bva08g00833 856 SUPERFAMILY RNA-binding domain, RBD 357 501 IPR035979 GO:0003676
Bva08g00833 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 536 601 IPR000504 GO:0003723
Bva08g00833 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 426 IPR000504 GO:0003723
Bva08g00833 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 438 506 IPR000504 GO:0003723
Bva08g00833 856 SMART rrm1_1 437 514 IPR000504 GO:0003723
Bva08g00833 856 SMART rrm1_1 357 430 IPR000504 GO:0003723
Bva08g00833 856 SMART rrm1_1 535 610 IPR000504 GO:0003723
Bva08g00833 856 Coils Coil 243 265 - -
Bva08g00833 856 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 299 849 - -
Bva08g00833 856 Gene3D - 435 520 IPR012677 -
Bva08g00833 856 MobiDBLite consensus disorder prediction 231 306 - -
Bva08g00833 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 534 616 IPR000504 GO:0003723
Bva08g00833 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 436 521 IPR000504 GO:0003723
Bva08g00833 856 SUPERFAMILY RNA-binding domain, RBD 525 641 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00833 Bva-Chr8 4292937 4298985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00833 358 602 Eukaryotic Initiation Factors Gene Family AT2G23350 25.197 4.65e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00833 - - jre:108992028 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00833 08 4292937 4298985 Bva08g00833 08 4292937 4298985 ECH