Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00832 ATGTCTTCTGCCGGAGAAGGTGATGCTGCTCCCAACGTTGAACAACCACCTGCGGAGGAGGAGAAAGCCCCCCAGCCGCAGGAGGCTAAGCCagtgaaagagaagaagcCCAAGGCTCCCAAAGAGAAGAAGCCCAAACAGCCCAAAGCTGCTGCTCATCCTCCATACTTTCAgATGATCGAAGAGGCCTTATTGGCCATCAAGGATAAGGGTGGTTCTAGTCCATATGCCATAGCCAAGTACATGGAGGAGAAGCATAAGTCGGTGCTCCCTGCGaatttcagaaaaattttGGCTCTGCAACTAAAGAACCAAGCTGCGAGAGGGAAACTCATCAAGATTAAGGCTTCGTACAAGCTAGCCGAAGCTGCtaagaaggagaaggagaaggagaaggaaaaggaaaataaaatggagaCAAGGTCCATCACGGAGAAGAAGGAGCGCCCGAAACGAAAAGCTACGATCACCGCCAGCGCTGCTACTACAACGGCCAAGTCGACTAAGAAAACAGAGACCGCTAACAAGGTTGCGAAGCCTGCAAAGAGAGGTGCGGCgaagaagacgaagaagaCGACGCCTGCAAAACCCAAAGTGCCAAAGTCTTTGAGGTCTCCTTCCAAAAGGACAAGGAGAGCTATTGCTGCATG 650 0.4523 MSSAGEGDAAPNVEQPPAEEEKAPQPQEAKPVKEKKPKAPKEKKPKQPKAAAHPPYFQMIEEALLAIKDKGGSSPYAIAKYMEEKHKSVLPANFRKILALQLKNQAARGKLIKIKASYKLAEAAKKEKEKEKEKENKMETRSITEKKERPKRKATITASAATTTAKSTKKTETANKVAKPAKRGAAKKTKKTTPAKPKVPKSLRSPSKRTRRAIAA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00832 216 SUPERFAMILY "Winged helix" DNA-binding domain 50 134 IPR036390 -
Bva08g00832 216 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 52 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva08g00832 216 PRINTS Histone H5 signature 66 83 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva08g00832 216 PRINTS Histone H5 signature 140 154 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva08g00832 216 PRINTS Histone H5 signature 39 60 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva08g00832 216 PRINTS Histone H5 signature 190 209 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva08g00832 216 Pfam linker histone H1 and H5 family 53 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva08g00832 216 Coils Coil 111 141 - -
Bva08g00832 216 MobiDBLite consensus disorder prediction 181 216 - -
Bva08g00832 216 MobiDBLite consensus disorder prediction 123 154 - -
Bva08g00832 216 MobiDBLite consensus disorder prediction 1 55 - -
Bva08g00832 216 PANTHER HISTONE H1 6 214 - -
Bva08g00832 216 MobiDBLite consensus disorder prediction 21 38 - -
Bva08g00832 216 SMART h15plus2 50 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva08g00832 216 CDD H15 51 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva08g00832 216 MobiDBLite consensus disorder prediction 156 171 - -
Bva08g00832 216 MobiDBLite consensus disorder prediction 123 216 - -
Bva08g00832 216 Gene3D - 46 137 IPR036388 -
Bva08g00832 216 PANTHER HISTONE H1 6 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00832 Bva-Chr8 4290637 4291650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00832 54 120 Single Myb Histone (SMH) Gene Family AT1G72740 41.791 7.00e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00832 K11275 - gmx:100500169 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00832 08 4290637 4291650 Bva08g00832 08 4290637 4291650 ECH