Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00825 ATGCGAACGCTTTGTGACGCTTGTGAGAGCGCGGCCGCCATCGTGTTCTGCGCTGCTGATGAGGCTGCTCTTTGTCGTGCCTGCGACGAAAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCGCACTGTGACATATGTGAAAATGCACCTGCTTTCTTTTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAATGCGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATTCAAGATATCTTCTTTTCAGGCAGAGAGTTGAGTTTCCAGGGGACAAGCCAGGTCAAGGGGAAAATCCAGCTTCACAACCTATGGAACCTGGTGACAATAAAAGAGCGCAAAATTCGCTGCCCAAAGtgaaaatgggagagaaacaacaaaatcacAGGATGCCTATGGTTCCGACGCCAGAACCTGATGCTGATGGACATGCCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTCAAAGAATACATGAACATGCTTCAAATAATCAGCCTTA 554 0.4386 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPHCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHSRYLLFRQRVEFPGDKPGQGENPASQPMEPGDNKRAQNSLPKVKMGEKQQNHRMPMVPTPEPDADGHAKMETKMIDLNMKPQRIHEHASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00825 184 CDD Bbox1_BBX-like 4 47 - -
Bva08g00825 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Bva08g00825 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Bva08g00825 184 MobiDBLite consensus disorder prediction 103 158 - -
Bva08g00825 184 Gene3D Classic Zinc Finger 2 94 - -
Bva08g00825 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Bva08g00825 184 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Bva08g00825 184 CDD Bbox1_BBX-like 56 96 - -
Bva08g00825 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bva08g00825 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Bva08g00825 184 Pfam B-box zinc finger 53 91 IPR000315 GO:0008270
Bva08g00825 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Bva08g00825 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00825 Bva-Chr8 4241202 4243920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00825 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.749 1.07e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Bva08g00825 zf-B_box 6.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00825 - - gmx:100780544 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00825 08 4241202 4243920 Bva11g01547 11 14579037 14581700 BWGD
Bva08g00825 08 4241202 4243920 Bva08g00825 08 4241202 4243920 ECH
Bva13g01761 13 14210098 14212080 Bva08g00825 08 4241202 4243920 ECH
Bva14g02233 14 18932069 18933488 Bva08g00825 08 4241202 4243920 ECH