Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00820 ATGGAACAGCATCAACCGGATGAAAAGCAACTAGCTTTGGTTTTGTACGAGCCCAGTATTCTTGTTAAGGATGAGGGAAGACCGAGTTTTCAAGCTTCCGACACAACTGTCGACCTGATGAACGTCGATCAATGTCAGGGTGTTAGGGATATGGAGGATTCCCAGCTCGTCGGAGTTCCTGTGGCACTTGCTCGCGATGTTGACGTGGCCCAGAGACAAGATGGTTGCCTGCCCAATTCGGAGGTCAAGATAGAGGTTCAGGTTGCCGACGGAATTGTCGGAAAACGGAAGCGCGGCCGTCCCGCCAGGGGTCAATCCAAAACGCCGCCATTGAAGAAGCAGCAGGAAGAGGAGGAGGATGTTTGTTTCATTTGCTTCGATGGTGGGAACCTTGTTCTCTGTGATCGCCGggGTTGTCCTAAGGCATATCATCCCGCGTGCATTAAGCGAGACGAGGCATTCTTTCGTTCAAAGGCCAAATGGAACTGCGGTTGGCATATATGCAGTGTTTGTCGGAAGGCATCCTATTATATGTGCTATACTTGTCCATATTCTTTGTGCAAGGGATGTACAAAAGGTGCTGATTATGTCTCTGTAAGAGGAAATAAAGGTTTATGCGGAATATGCATGAGAACTATAATGCTCATTGAGAACAGTGCGCAGGGAAATAAGGAAATGTGTCAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGTGTATTGGGCATACTTGAAGGGGAAGTTATCGTTAACTTTAGATGAACTCCTTCGAGCTAAAAACCCATGGAAAGGAGCTGCTATTTTGGGTTATAAGATTGAAACTTCCCATGAATTACATCTTCTTAAAGATGACAAAGGTTCCGGTTCTGAGAATTCCTGTATAGATATAGAGtcaaataatttagaaaacaaagaCATTAAGAGACAGGAATGGGCATCGAAGGAGCTTTTAGAGTTTGTTGCACACATGAGAAATGGTGATACATCTCTCCTGTCTCCATTTGATGCGCAGAATCTTTTGCTGGAGTatgtgaagaaaaataatcttcGAGATCCTCTACAGAAATGTCAGATTGTTTGTGATACTAGgctaataaatttgtttgggAGAGAACGCGTAGGTCACATTGAAATGATAAAGCTTCTTGAATCTCACTTTCTTATGAAGGAAAGTACCCCTCCTGAAAGCATTGTTACAGCAGGAATTATTGATGCTGTTACTGGCCAGGTTGAGTCTAATGGTTATTACAATAACCAGTTGACAGTGGTTAATGATAAGAGACGTAAGACACGTAAAAAGGTTGATGTTCAAGTACCTCAAAATAATCCGGATGCATATGCTGCAATAAATGCTCACAACATTAACTTGATTTACTTGCGACGCAATCTCATGGAGAATCTACTGGAAGATGCTGAAATGTTTCATGACAAGGTTGTTGGTTCAATTGTGCGGAAAAGAATATCTAGTAATGATCAAAAGCAAGAGATGTATAGGCTTGTCCAAGTTGTAgGTACAAGAAAGGTTGCCGAACCTTACAAAACTGGCACCAGAACAACAGACTTTGtgcttgaaattttaaatttaaacaagaaagagaCCATATCAATTGACGAGATTTCAAATCAAGAGTTCTCTGAGGATGAATGCAAGCGTATGCGAGAGAGTATTAAGTACGGGCTCTCAAGGAAACTGACTGTGGGAGAGATTCTAGACAGAGCATTGATACTTCAAGCGGTTAAAGTTAGTGATTTTCTGGATGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGACATGGAAAAGAATATCCTTTACtatatCTACTGAGCTCACCAGAGGAACGACAGCGCAGGCTGCAAGAAGTTCCTGTGGTACACTCTGATCCAAATATTGATTATATGTTCGAGTCTGATGAAGATAATGGAGAGTCAGGCGAAAGGAAACAAGATGAAAATAGAAGGTTGAATGATGTTGGGCGCAGAGCACAAGACTTACTGGTTGCTACCCCGGAAAATCCTAATACTGCAGCAACTTGTGACAGCAACCATGTGGGAGTGGTGAGATCAGAAGCATCTGGTGCTGCGTTAGATGTTTCTTCATTGCCTCTCCCTACAGGGATGGAGCagtcatttaataattttgcagGTAATAAATTTTGGCACTATCAGGATCCAACTGGGAAGATTCAAGGACCCTTTTCTCTGTTGCAGCTATATAAATGGAACAGCTGTGGACATTTCCCTCCTGATCTTAGAATATGGAGGATAAATGAGGACCAAAGTAACTCTATATTATTATCTGATGCATTAGATGGGAAGTATCATAAAAGTGTATCTTCAGGAGTCGAGGTTATGTTGGATGATGTAGATAATGGAAAACATGACTCAAACAGGAACTCCGAGGGTCAAAGTAATAGTGGACAGAGTTATCAAAAACAATCAGACAGTGAGGGAACTTCAGGGCAATCTTCTGGACAGAACTGGAGGCCTCCACATGTTAGTAGTTCCTCTAGTTGTTTGGTTACTACATCGGCTCTTCTTTCTGTGACAAATCCCTCACCACGAAATCAAGAATTCGATTTGCCCAGCCCCACTCCTGTAACTAGTTCCTCGAATTGCTGCGATTCTGCATCTGCTTTCATTTCTGCAGCAAAACCACAAAACCCAGAGATTGATTTCTCAAAGTTACCTAGTCGTACCGCTACGCCAAATAATTCTGAATCAGTAGTTCCTGCCAGCGAAAACAGACAGTCTGCTTGTTCAAATGTTCCTATTCAAGATGCTGGCCCGAGCTGGAGCACTGCTTCCAGTTTAGTCGGTGGTGCAACACCACTTCCTGAAGTGACTGTTGAATGGAGATGCTCACAGGCTCCACCTGACCCTTCTGTTGAGGAATGGGACTCCAATCTTGTCTCTGCATCTTCATTGAAAGTGGTTAAAACCGTTGGTGATTGTGCTGCTACTCCATCTTCAATAAATGACCAATTAACACATAGCCCCCCCTCCCACCCAGCTTGTAATACGTCTACATGGCAGGCAATCATTGGGGAACCCAATGAATTTGAATCATTAGTTGATGAATCAGTTTCAGATTTGTTGGCAGAAGTGGAGGCAATGGAGTCTCTTGGTGGTTTGGACTCTGCTTCGTCAATCATGCGTTGTGGTGAGGAACTAACTGAGGATTCAAAAACTGATTGTCTCAGTCCAGCAGACGGCCTTAGCCCAATGCCTGATGCAGGTAAAGGCGATGCACTGAGCTCCACAGGTGATATACAATTAGCTTCTCAATCCACAGCAGCAGAGGAAACATTATGCCAAGCAGATCTACATCATCATCAAAGAGTATCTGGGGGGCATTCCTCAACAAGTGCTGAAGTTGAGGTGGGTACAAAAAACAGCAGTATAACAGGTAAGCAATGGGAATCAAGTTCTAAAATCCCATCCACTGTCCCAGAACCAGCAACCTCGGACATGGCCTCAGACACCACTTGGAGGCTTGGGTTACAGAGTAATGGCGGGTGGCAAGCATCTCAGGAAAATGTAAATGTGAGCATGGGCTGGGGTGGAATGGATCAAGCAAATCCAAGCATAGCTTGGGGAGTGGGTCAGCCTCAGGGGGCAGCTCAGGTTAACAGGAACATAAATTCATACAGTAGTTGCATGGGAACTCCGGGCTTCTGGGGAAGCCAACCAAGATATGGCAATGGCAGCGATCGAATTTCGCCCAGAGATCGTGGTTTTCATGGTAACGTTAGGGGTAGAAACGTGTGGAACAGGCAGCCACCATTTGGTGTCGGAAATGGGGGCTCCTACAGGCCTCCGCCCAAAGGGCAGCgagtttgtaaattttatgaaagtgGTTACTGTAAGAAGGGAGCATCATGTGGTTATTTGCACCCATA 3929 0.4301 MEQHQPDEKQLALVLYEPSILVKDEGRPSFQASDTTVDLMNVDQCQGVRDMEDSQLVGVPVALARDVDVAQRQDGCLPNSEVKIEVQVADGIVGKRKRGRPARGQSKTPPLKKQQEEEEDVCFICFDGGNLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCRKASYYMCYTCPYSLCKGCTKGADYVSVRGNKGLCGICMRTIMLIENSAQGNKEMCQVDFDDKSSWEYLFKVYWAYLKGKLSLTLDELLRAKNPWKGAAILGYKIETSHELHLLKDDKGSGSENSCIDIESNNLENKDIKRQEWASKELLEFVAHMRNGDTSLLSPFDAQNLLLEYVKKNNLRDPLQKCQIVCDTRLINLFGRERVGHIEMIKLLESHFLMKESTPPESIVTAGIIDAVTGQVESNGYYNNQLTVVNDKRRKTRKKVDVQVPQNNPDAYAAINAHNINLIYLRRNLMENLLEDAEMFHDKVVGSIVRKRISSNDQKQEMYRLVQVVGTRKVAEPYKTGTRTTDFVLEILNLNKKETISIDEISNQEFSEDECKRMRESIKYGLSRKLTVGEILDRALILQAVKVSDFLDAEILRLNHLRDRASEKGHGKEYPLLYLLSSPEERQRRLQEVPVVHSDPNIDYMFESDEDNGESGERKQDENRRLNDVGRRAQDLLVATPENPNTAATCDSNHVGVVRSEASGAALDVSSLPLPTGMEQSFNNFAGNKFWHYQDPTGKIQGPFSLLQLYKWNSCGHFPPDLRIWRINEDQSNSILLSDALDGKYHKSVSSGVEVMLDDVDNGKHDSNRNSEGQSNSGQSYQKQSDSEGTSGQSSGQNWRPPHVSSSSSCLVTTSALLSVTNPSPRNQEFDLPSPTPVTSSSNCCDSASAFISAAKPQNPEIDFSKLPSRTATPNNSESVVPASENRQSACSNVPIQDAGPSWSTASSLVGGATPLPEVTVEWRCSQAPPDPSVEEWDSNLVSASSLKVVKTVGDCAATPSSINDQLTHSPPSHPACNTSTWQAIIGEPNEFESLVDESVSDLLAEVEAMESLGGLDSASSIMRCGEELTEDSKTDCLSPADGLSPMPDAGKGDALSSTGDIQLASQSTAAEETLCQADLHHHQRVSGGHSSTSAEVEVGTKNSSITGKQWESSSKIPSTVPEPATSDMASDTTWRLGLQSNGGWQASQENVNVSMGWGGMDQANPSIAWGVGQPQGAAQVNRNINSYSSCMGTPGFWGSQPRYGNGSDRISPRDRGFHGNVRGRNVWNRQPPFGVGNGGSYRPPPKGQRVCKFYESGYCKKGASCGYLHP 1309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00820 1309 MobiDBLite consensus disorder prediction 903 931 - -
Bva08g00820 1309 Gene3D - 728 786 IPR035445 -
Bva08g00820 1309 Pfam Plus-3 domain 457 560 IPR004343 GO:0003677
Bva08g00820 1309 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 32 787 - -
Bva08g00820 1309 SUPERFAMILY FYVE/PHD zinc finger 115 173 IPR011011 -
Bva08g00820 1309 SMART rtf1 452 562 IPR004343 GO:0003677
Bva08g00820 1309 MobiDBLite consensus disorder prediction 807 845 - -
Bva08g00820 1309 MobiDBLite consensus disorder prediction 1123 1167 - -
Bva08g00820 1309 Pfam GYF domain 729 770 IPR003169 GO:0005515
Bva08g00820 1309 CDD PHD5_NSD 121 166 - -
Bva08g00820 1309 MobiDBLite consensus disorder prediction 1125 1167 - -
Bva08g00820 1309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 211 IPR013083 -
Bva08g00820 1309 Gene3D SWIB/MDM2 domain 302 398 IPR036885 -
Bva08g00820 1309 CDD SWIB-MDM2_like 315 390 - -
Bva08g00820 1309 Pfam SWIB/MDM2 domain 317 390 IPR003121 -
Bva08g00820 1309 MobiDBLite consensus disorder prediction 1259 1280 - -
Bva08g00820 1309 ProSiteProfiles GYF domain profile. 726 780 IPR003169 GO:0005515
Bva08g00820 1309 MobiDBLite consensus disorder prediction 649 667 - -
Bva08g00820 1309 SUPERFAMILY Plus3-like 453 580 IPR036128 GO:0003677
Bva08g00820 1309 SMART PHD_3 121 167 IPR001965 -
Bva08g00820 1309 ProSiteProfiles Plus3 domain profile. 452 585 IPR004343 GO:0003677
Bva08g00820 1309 SUPERFAMILY CCCH zinc finger 1284 1308 IPR036855 GO:0046872
Bva08g00820 1309 MobiDBLite consensus disorder prediction 860 881 - -
Bva08g00820 1309 ProSitePatterns Zinc finger PHD-type signature. 122 182 IPR019786 -
Bva08g00820 1309 ProSiteProfiles SWIB/MDM2 domain profile. 309 392 IPR003121 -
Bva08g00820 1309 Gene3D - 453 582 IPR036128 GO:0003677
Bva08g00820 1309 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 874 1309 - -
Bva08g00820 1309 SUPERFAMILY SWIB/MDM2 domain 306 391 IPR036885 -
Bva08g00820 1309 ProSiteProfiles Zinc finger C3H1-type profile. 1284 1309 IPR000571 GO:0046872
Bva08g00820 1309 CDD GYF 729 779 IPR003169 GO:0005515
Bva08g00820 1309 SUPERFAMILY GYF domain 725 779 IPR035445 -
Bva08g00820 1309 MobiDBLite consensus disorder prediction 640 667 - -
Bva08g00820 1309 MobiDBLite consensus disorder prediction 797 845 - -
Bva08g00820 1309 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 32 787 - -
Bva08g00820 1309 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 874 1309 - -
Bva08g00820 1309 SMART gyf_5 727 782 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00820 Bva-Chr8 4217993 4224117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00820 119 192 PHD Transcription Factor Family AT4G14920 36.486 3.12e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Bva08g00820 Plus-3 1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00820 - - aprc:113869503 1413.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00820 08 4217993 4224117 Bva08g00820 08 4217993 4224117 ECH