Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00815 ATGCTTTACCAAACGCACCATCCacttttcattcaatttcaTCCCCTCGCTTCATCCACCCCTGAATTCCCAACCATATCATCGTCTCTCTCCTCTGCTCCTCTCTTTTCACATCTTCCCCTGCTTAAGgcTGAAACAGAAATGGCGTGCGTGGAAGCAGCAGCGTTGAAGACCAGTTTTAGAAAAGACATGGCCATGAAATTAAGCCCCCAAGCCTACATGGAGGAGTTTTCGGTGTTTAATGTGCAAAATGGTGCTCCTTCCGATGACTTTTCTGTGGACGACCTCCTTGACTTTTCGCATGAAGAAGCCCTTATCCTAGAGCAACAACCGGAGGAAGAGGAATACAAGGCTGCCCTTGTCTCTGTTTCCACTCAACAAGAGAACCAAAGCCACGAAACATCTTACCCTGTTATCCTCAAAGAAGAATTTGGGCGTGTGCCACTGCCTACCAGTGAACTCACCGTTCCGgCAGATGATTTGGCAGACTTAGAGTGGTTGTCTCATTTCGTTGAGGATTCCTTCTCGGAATACTCTACTGCTTACCCCATCGGAACTTTAACGGAGAAACCCAAGAGCCATGCAGAGAAAGAGCCTGAACCGGGAAGCCCTGTTTTGACTCAACCCTGTTTTAAAACTCCAGTGCCTGCCAAGGCCAGAAGCAAGCGAACAAGGACCGGTGTTCGGGTCTGGCCACTTGGTTCTCCTTCGTTCGCCGAATCATCCTCAACGTCTTCCTCTTCATCGTCCTCTTCGTCCCCCCAGAGCCCTTGGTTAATTTACACCAACACCAACCAGAGCCTCGAGCAGGTTTCGTCCGAAGCTAAACCCCCAGCgaagaaaccaaagaaaaagccGGCGTCGGACGGAACGGGGAGCGGCGGGGGACAGACTCCTCGACGGTGCAGCCATTGTGGTGTTCAGAAGACCCCACAGTGGCGAACCGGGCCACTTGGTGCCAAAACACTTTGCAACGCATGCGGGGTTCGATACAAGTCGGGTCGACTCTTACCCGAATATAGACCAGCGTGTAGCCCGACATTCTCGACTGAATTGCACTCAAACCATCACCGGAAAGTGCTGGAGATGCGGCGTAATAAGGAGGCAATTGGTGGAATTGAGTCCGGTTTGGCCCCTCCTCCGGCTGTCCCCAGTTTTTG 1160 0.5026 MLYQTHHPLFIQFHPLASSTPEFPTISSSLSSAPLFSHLPLLKAETEMACVEAAALKTSFRKDMAMKLSPQAYMEEFSVFNVQNGAPSDDFSVDDLLDFSHEEALILEQQPEEEEYKAALVSVSTQQENQSHETSYPVILKEEFGRVPLPTSELTVPADDLADLEWLSHFVEDSFSEYSTAYPIGTLTEKPKSHAEKEPEPGSPVLTQPCFKTPVPAKARSKRTRTGVRVWPLGSPSFAESSSTSSSSSSSSSPQSPWLIYTNTNQSLEQVSSEAKPPAKKPKKKPASDGTGSGGGQTPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRNKEAIGGIESGLAPPPAVPSF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00815 386 Pfam GATA zinc finger 302 336 IPR000679 GO:0006355|GO:0043565
Bva08g00815 386 MobiDBLite consensus disorder prediction 190 310 - -
Bva08g00815 386 PANTHER GATA TRANSCRIPTION FACTOR 48 369 - -
Bva08g00815 386 SMART GATA_3 296 350 IPR000679 GO:0006355|GO:0043565
Bva08g00815 386 MobiDBLite consensus disorder prediction 291 310 - -
Bva08g00815 386 MobiDBLite consensus disorder prediction 236 273 - -
Bva08g00815 386 CDD ZnF_GATA 301 349 IPR000679 GO:0006355|GO:0043565
Bva08g00815 386 Gene3D - 294 368 IPR013088 GO:0006355|GO:0008270
Bva08g00815 386 ProSitePatterns GATA-type zinc finger domain. 302 327 IPR000679 GO:0006355|GO:0043565
Bva08g00815 386 ProSiteProfiles GATA-type zinc finger domain profile. 296 332 IPR000679 GO:0006355|GO:0043565
Bva08g00815 386 PANTHER GATA TRANSCRIPTION FACTOR 48 369 - -
Bva08g00815 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 296 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00815 Bva-Chr8 4183117 4184992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00815 51 386 C2C2-Gata Transcription Factor Family AT5G66320 54.598 9.77e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva08g00815 GATA 5.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00815 - - pmum:103340171 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00815 08 4183117 4184992 Bva11g01557 11 14630130 14631652 BWGD
Bva08g00815 08 4183117 4184992 Bva08g00815 08 4183117 4184992 ECH