Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00811 ATGGGTCGAGGAAAGATTGAGATCAAGTTGATTGAGAACCCAACCAATAGGCAAGTCACATACTCTAAGCGACGTAATGGGATCTTCAAGAAAGCTCACGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCCCTCATCATGTTCTCTAGAAACAACAAGATGCACGAATACATCACCCCTGGTCTCACGACCAAGAAGGTCATCGATCAGTACCAGAAGAATATGGGGAATATTGATCTTTGGCGTGCCCACTATGAGAAAatgcttgaaaatttgaagaaactgaaagatataaataataaacttcGAAGACAGATCAGGCAAAGGATGGGTGAAGATTTGGACGACCTCAGCTTTTCCCAGCTACGCAATCTCGAGGAAGATATGGTTTCTTCCGTAGGGGTCATACGTAATCGAAAGTACCATGTCATCAAAAATCGAACTGACACCTGTAAGAAAAAGGTTAGAAGCTTGGAGCAGTTAAACGGAAATCTACTGCTATGCATTAAGGAAAAAGGTGTTGTGATCCATCCACAGTATGGTTTGTTGCATGATGAAATTGAAGGAGGAGATCCAGAATCACAGGTTGCACTGACCAATGGTGCCTCCAACCTTTTTGCCTTCTGCCAGCACCAGAGCCATGCCAATGTCAGTAGTCTTCACCACGGAGTAGGATTTAAATCCGACGATCTGCGCCTTGCTTGATTGATTCCCAACCATCAGCCCTGCATGTACTTTAGCAGCAGCACTTGTCTGtgctataatataaatattctagTTACAGAAACAGCTAGCTAGCTTACTTATATAGTGTTCCTGTTCAACTGCAATGTAACCAGCTGCCCAAAACAGAATACATTTCTGTGtggtattttattatttatatagtattttgCTTATAGTTTCGTCTTATGTCTTGTTTGGACATCaca 932 0.3948 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSRNNKMHEYITPGLTTKKVIDQYQKNMGNIDLWRAHYEKMLENLKKLKDINNKLRRQIRQRMGEDLDDLSFSQLRNLEEDMVSSVGVIRNRKYHVIKNRTDTCKKKVRSLEQLNGNLLLCIKEKGVVIHPQYGLLHDEIEGGDPESQVALTNGASNLFAFCQHQSHANVSSLHHGVGFKSDDLRLA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00811 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva08g00811 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva08g00811 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva08g00811 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva08g00811 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Bva08g00811 234 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Bva08g00811 234 Pfam K-box region 84 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva08g00811 234 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Bva08g00811 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bva08g00811 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Bva08g00811 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva08g00811 234 ProSiteProfiles K-box domain profile. 85 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva08g00811 234 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 234 - -
Bva08g00811 234 Coils Coil 85 112 - -
Bva08g00811 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00811 Bva-Chr8 4165935 4167581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00811 1 214 MADS-box Gene Family AT3G54340 48.131 1.23e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva08g00811 K-box 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00811 K09264 - gmx:100784496 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00811 08 4165935 4167581 Bva08g00811 08 4165935 4167581 ECH