Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00749 ATGTCATTGAAAAGCATAGTTAGTGAactgaagaagatgaaagatGGCATGGGCATATCAAGGCGAGTTGCAGAAGGCAGGCAATGGCTCAGTCGGTCAAAGTCACATGTTGCTCCTGATGGCCCTCTACCTACATATGAACCTATAGAACAGGGACAATGGGCAAATCTACCACCGGAACTACTTTTGGACATAATCCGGAGAGTTGAAGAAAGTGAACAATCTTGGCCTGCGCGGGCAGTCGTTGTTTTTTGTGCTTCAGTGTGTAAATCATGGAGGGCCATCACAAAGGAGATCGTCAAAACTCCTGAGCAATGTGGAAGGCTCACATTTCCCATCTCATTGAAGCAGCCGGGTCCTCGGGATACTCCCATACAGTGCTATATCAGGAGGAACAGAGAAACTTCTACGTATATATTGTACTATGGTCTGGTGCCATCGGAGAATGAGAGTGATAAGTTGCTATTAGCTgcaaaaaagataagaaggGCAACAGGCACAGACTTTGTGATATCTTTGGTtgcaaatgatttttctcGGGCTAGGTTGACGTATGATAGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACCATTTACGACAGCCATCCTCCGCTTGAAGCTGGAGTTCAACCAAATAATCGTTCTAGTCGGAGGTTTCACTCTAAGCAGGTATCTCCGGGAGTTCCAGCATGCAACTACAATGCTGGCACCATTTCCTATGAGCTCAACGTTCTCCGTACTAGAGGACCGAGAAGAATGCGTTGCATCATGAATTCTATACCTGTCTCGGCTATTCAGGAAGGGGGCAATGCCCCCACACCAACATCGTTTCCTCGTATCGATGAGCAATCCTCTCTCTTGCCAGCATTGCAAGGGAAAGATCCCCTTTTAGATTTTAGCCCTGCAAATCTCTCAGAACCACCAGTGTCGAACCAGGTTTCAGTTGAGCCCCTCATGCTTAAAAATAAGGCTCCCAGATGGCATGAGCAGCTGCAGTGCTGGTGCCTTAACTTCAAGGGTCGTGTTACAGTTGCTTCTGTTAAGAATTTTCAGCTCGTGGCTGCTGTTGACCCCTCGCATAATGTTTCTGCTGCAGAACAAGACAAGGTAATATTGCAGTTCGGAAAGATTGGAAAAGACATATTTACAATGGATTACCGTTATCCACTCTCTGCCTTCCAGGCCTTCGCTATTTGCTTGAGCAGCTTTGATACTAAACCTGCCTGTGAATG 1238 0.4451 MSLKSIVSELKKMKDGMGISRRVAEGRQWLSRSKSHVAPDGPLPTYEPIEQGQWANLPPELLLDIIRRVEESEQSWPARAVVVFCASVCKSWRAITKEIVKTPEQCGRLTFPISLKQPGPRDTPIQCYIRRNRETSTYILYYGLVPSENESDKLLLAAKKIRRATGTDFVISLVANDFSRARLTYDSKLRSNFLGTKFTIYDSHPPLEAGVQPNNRSSRRFHSKQVSPGVPACNYNAGTISYELNVLRTRGPRRMRCIMNSIPVSAIQEGGNAPTPTSFPRIDEQSSLLPALQGKDPLLDFSPANLSEPPVSNQVSVEPLMLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00749 412 PANTHER TUBBY-RELATED 1 412 - -
Bva08g00749 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Bva08g00749 412 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bva08g00749 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Bva08g00749 412 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bva08g00749 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Bva08g00749 412 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bva08g00749 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Bva08g00749 412 SUPERFAMILY F-box domain 48 98 IPR036047 GO:0005515
Bva08g00749 412 Gene3D - 47 101 - -
Bva08g00749 412 Gene3D Tubby Protein; Chain A 112 412 IPR025659 -
Bva08g00749 412 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 412 - -
Bva08g00749 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Bva08g00749 412 SUPERFAMILY Tubby C-terminal domain-like 103 412 IPR025659 -
Bva08g00749 412 Pfam F-box domain 54 101 IPR001810 GO:0005515
Bva08g00749 412 Pfam Tub family 115 407 IPR000007 -
Bva08g00749 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00749 Bva-Chr8 3890469 3893600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00749 1 412 TUB Transcription Factor Family AT2G18280 63.285 2.17e-179 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva08g00749 Tub 6.4e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00749 K19600 - gmx:100798958 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00749 08 3890469 3893600 Bva11g01597 11 14808855 14811930 BWGD
Bva08g00749 08 3890469 3893600 Bva08g00749 08 3890469 3893600 ECH