Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00747 ATGGGAACTGATGTCAACGAAGTAGTGGAGCCATTACCAAACCCTCGCTCCTTCAAGGTACATCGTGCAATGTGTACAGAACTAATGAAATTAGTTGATAGAATCTCAAGAATATTTCCAGATATAGAGGCAGCTCGGCCTCGATGTTCCTCAGGAATACAGACTCTGTGCTTGCTAAACGCCACTATTGAGAAAGCCAAACTTCTTCTGCAATATTGCTGTGAATCTAGTAAACTCTACCTGGCTCTGACAGGGGATGCAGTACTTTCAAGATGccagaaattaagaaaatcattGGTCCAAAGCTTAGGCGCAATTCAGAATATGGTTCCAGTTATGTTGGCTTTGGAGATTTCTCAAATAATTGATGATCTTCAATCTGTGACATTTATCCTGGACTCAGCTGAAGAAGAGGCTGGGAATGTTGTGAGAGAATTGCTCCAGCAAGGCACTTCAGCGTCAGATCTAATGGAAAATTCTGAAATTAAAGCTCTCAAATTTGCTGCAGCAAGACTTAATATAACTTCCCAAAAGGCCACCGTAATAGAGAAAAGATCCATCAGGAAGTTGCTGGATAAAATTGGATCCAACGATTCTAGCAAAAAGATGATCTTGAGATATCTTTTATATCTGTTGAAAAGATATGGGAACTTGATTATGGGAGAACAAATGGAGGTCTATGCTGATGTTGAAGGACCAATTGCAAGTGAGAACTCTACTCTAAGTTCCTTGCGTAGCCATCATATTGAATCAGATTCATGCTCCCAGAATGACCAGCATGAAACTCACAATGGTGAGTCCAGTAGCCCCCCGGAGGAATATAAGTGCCCAATATCTTCAAGAGTGATGTATGATCCTGTTGTCATTGCTTCTGGAGTAACATATGAAAGGATGTGGATAAAGAAGTGGTTTGATGAGGGCAACGATTTCTGCCCCAAAACTAGGAAGCAGCTGGTCCATATGTCATTGACTCCAAACATTGCCATGAAGGACTTGATATCAAAGTGGTGCAGAAATAATGGAGTCACCATTCCTGACCCAAGTAGGAAAGCTGAAGATTTCCGCTCATGGGAAGTTTCCTCAACATCTATTCGGAGCTTGGGCAGTTCTTTGAATGATTTGCATTTGCCAGCGGATCTTAGCAACATTTCACTTGGATCCTTAGATACGAGTTATAATTCTGATTCTTCCCATGCTAAGATCACCCATGGCTTAAACTCGATGTTGATAAATACCAATGATGATTCTCGCGGACAGCCTACTCAAGCGCACATGCCTGATACTGACTTGATGCTTTTGTCTAAACTCCCTGACCTTCAGTGGGACTTTCAATGCCAGGTCATTGAAAAGCTGAAAAGCTCTTTCAAGTGCAATTACCAAGCTGTTGATTCTGTGTCATCTGAGAATTTCATCGAACCACTTATCAGATTTCTGAGAGATGCATATGATCTGCATGATGTGAGAGCACTGAGAGCTGGAACTCAGGTGCTATTGGAATTTGTAAGCAATTGCAGAAATTGTGTAACTTATTTAACTGAAGATACATTCAGTATGTTAGGAAGTTTTCTTGATTCGGAAGTAATAGAAGAAGCACTTGCCGTAATGGAGGAATTGTCTGGCTATGCTAAAATTGCAGTATCCTACGCACATTCACTCCCTTCCATTGTAAAGATTCTTGGCTCAGAGAGCCGAGAGTTCCAACAACGAGCCGTGAGAATAATGTATAATTTGTCCTTCAATGGTGATATTTGTTCTCACTTGCTATCTCTCGAGTGCATCCCAAAGTTGCTACCATTTCTAAGAGACAGGGCCCTCGCGAGATACTGTGTATGCATACTGAAAAACCTTAGTGATATTGAAGAGGGTCGGATTTCTGTTGTCGAAACTAAAGGATGTATATCTTCTATTGCTCAAATACTTGAGAGTGGCGGCAACGAGGAACAAGAATATGCATTGGCTGTTCTACTCTCTTTATGCTCTCAACGTGTTGACTATTGTCAGTTGGTCATGCATGAAGGGGTTATTCCTCCTCTCGTCTTTATCTCCCACAATGGAAATGAAAGAGGAAAGGCGAATGCATTGGAATTGCTCCGTCTCTTGAGAGATGTTGAATATGTTGCAGAACGTGTTATCTCAAATGTTGACACTTCACAAGATTCAAACAATCAACCTCAAGAGAAGACATCGTCAAAGGGATCtggttttttgaaaaaactatCTGTGTTCTCAAAATCCAGTACGCATGCATCAAAAACCAATAGATG 2264 0.4068 MGTDVNEVVEPLPNPRSFKVHRAMCTELMKLVDRISRIFPDIEAARPRCSSGIQTLCLLNATIEKAKLLLQYCCESSKLYLALTGDAVLSRCQKLRKSLVQSLGAIQNMVPVMLALEISQIIDDLQSVTFILDSAEEEAGNVVRELLQQGTSASDLMENSEIKALKFAAARLNITSQKATVIEKRSIRKLLDKIGSNDSSKKMILRYLLYLLKRYGNLIMGEQMEVYADVEGPIASENSTLSSLRSHHIESDSCSQNDQHETHNGESSSPPEEYKCPISSRVMYDPVVIASGVTYERMWIKKWFDEGNDFCPKTRKQLVHMSLTPNIAMKDLISKWCRNNGVTIPDPSRKAEDFRSWEVSSTSIRSLGSSLNDLHLPADLSNISLGSLDTSYNSDSSHAKITHGLNSMLINTNDDSRGQPTQAHMPDTDLMLLSKLPDLQWDFQCQVIEKLKSSFKCNYQAVDSVSSENFIEPLIRFLRDAYDLHDVRALRAGTQVLLEFVSNCRNCVTYLTEDTFSMLGSFLDSEVIEEALAVMEELSGYAKIAVSYAHSLPSIVKILGSESREFQQRAVRIMYNLSFNGDICSHLLSLECIPKLLPFLRDRALARYCVCILKNLSDIEEGRISVVETKGCISSIAQILESGGNEEQEYALAVLLSLCSQRVDYCQLVMHEGVIPPLVFISHNGNERGKANALELLRLLRDVEYVAERVISNVDTSQDSNNQPQEKTSSKGSGFLKKLSVFSKSSTHASKTNR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00747 754 SUPERFAMILY ARM repeat 432 709 IPR016024 -
Bva08g00747 754 MobiDBLite consensus disorder prediction 241 274 - -
Bva08g00747 754 CDD RING-Ubox_PUB 274 316 IPR045210 -
Bva08g00747 754 Gene3D - 444 709 IPR011989 -
Bva08g00747 754 Pfam U-box domain 271 340 IPR003613 GO:0004842|GO:0016567
Bva08g00747 754 PANTHER U BOX DOMAIN-CONTAINING 2 733 - -
Bva08g00747 754 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 733 - -
Bva08g00747 754 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Bva08g00747 754 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Bva08g00747 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 344 IPR013083 -
Bva08g00747 754 SUPERFAMILY RING/U-box 263 347 - -
Bva08g00747 754 MobiDBLite consensus disorder prediction 715 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00747 Bva-Chr8 3882719 3887942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00747 15 734 U-box Gene Family AT4G36550 38.745 1.05e-150 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00747 - - gmx:100791627 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00747 08 3882719 3887942 Bva11g01598 11 14812519 14817364 BWGD
Bva08g00747 08 3882719 3887942 Bva08g00747 08 3882719 3887942 ECH