Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00743 ATGGAAATGAGAGGCCAAGATAAGGAAATAGAGATGCCAACAACCTTGGGTTATAATCCTAATCCCCCTAAAAGGGAATCCTCTTCCAAGCTCTCTTCTTCAACTCTTGCTTCCACCATAGGGGAAAGAAGTGATCATGAAACTTCTCAAACTCACTCAATCTTGCAACCTCCAGAGCACCATAATCTTTATCACCCACCTCCTCCTTCTCCACTTCAACAATTGCAGAGACCCAGAAGAGATCCAGATCCAAGCTCATCTCCTATTGCCACCACAAGTGTAAGGAACACCTCCATTGCAGCAAGAGGAGAACCTTCACCACAGCCACAGCCACCGCCACAAGCACAAACAGGAGTAACAACAACCTCGGCAATCTCGACTCCGTTGATTAGGTACCGAGAATGTCTGAAAAATCATGCTGCGAGTATGGGTGGTCATGTAGTGGATGGCTGCGGCGAGTTCATGCCAAGCGGAGAAGAGGGCACCCCAGAATCCTTAAGATGTGCTGCTTGTGAGTGCCACCGGAATTTTCACCGAAAAGAGGCTGAAGGTGAAACTCAGCATGTTTCAAATTATTACAGTTATGCTAACAAAAACAACGATCAAAATAGGATACCTTCTCCTCATCATCATTCTCAATATCCTCATTTTTCCACTGTCCCCTCTTCTCTGCATCAGCAACATCATAGGTTCTCACATGGATTCGGTGCCACCCCTTCAGCCGGCATGATTCCTCCAATGATGATGGCCTTCGGCAGCGGCGGAGGTCCGGCAGAGTCTTCCAGCGAAGATCTCAACATGTTTCAGTCTAATGCCGGAGGCCAATCATCAGTGCAGCCACCACTATCAAAGAAGAGGTTTCGGACCAAGTTTACACAGCAACAAAAGGATAAGATGATGGAATTTGCTGACAAGTTAGGGTGGAAGATCCAGAAACATGATGAGCAGGAGGTGCAACAATTTTGTTCTCAAGTGGGTGTGAAAAGGCAGGTTTTCAAGGTTTGGATGCACAATAACAAACAAGCcatgaagaagaagcaagtGTA 1046 0.4579 MEMRGQDKEIEMPTTLGYNPNPPKRESSSKLSSSTLASTIGERSDHETSQTHSILQPPEHHNLYHPPPPSPLQQLQRPRRDPDPSSSPIATTSVRNTSIAARGEPSPQPQPPPQAQTGVTTTSAISTPLIRYRECLKNHAASMGGHVVDGCGEFMPSGEEGTPESLRCAACECHRNFHRKEAEGETQHVSNYYSYANKNNDQNRIPSPHHHSQYPHFSTVPSSLHQQHHRFSHGFGATPSAGMIPPMMMAFGSGGGPAESSSEDLNMFQSNAGGQSSVQPPLSKKRFRTKFTQQQKDKMMEFADKLGWKIQKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQAMKKKQV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00743 348 SUPERFAMILY Homeodomain-like 273 345 IPR009057 -
Bva08g00743 348 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 284 341 IPR006455 -
Bva08g00743 348 MobiDBLite consensus disorder prediction 1 121 - -
Bva08g00743 348 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 131 181 IPR006456 -
Bva08g00743 348 MobiDBLite consensus disorder prediction 79 104 - -
Bva08g00743 348 Gene3D - 269 345 - -
Bva08g00743 348 MobiDBLite consensus disorder prediction 61 75 - -
Bva08g00743 348 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 56 346 - -
Bva08g00743 348 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 132 181 IPR006456 -
Bva08g00743 348 Pfam ZF-HD protein dimerisation region 130 182 IPR006456 -
Bva08g00743 348 MobiDBLite consensus disorder prediction 20 57 - -
Bva08g00743 348 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 346 - -
Bva08g00743 348 MobiDBLite consensus disorder prediction 200 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00743 Bva-Chr8 3857024 3860074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00743 131 348 ZF-HD Transcription Factor Family AT2G18350 53.394 3.38e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva08g00743 ZF-HD_dimer 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00743 - - tcc:18610918 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00743 08 3857024 3860074 Bva11g01602 11 14841922 14844360 BWGD
Bva08g00743 08 3857024 3860074 Bva08g00743 08 3857024 3860074 ECH