Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00722 ATGGCGTCAAAGAAGGAGGCAAAGGAGGAATCTGTGGAGTCGCCGACTTCGGTGCTTGAAGATGAGGATACTTGTGGGGTCAAAGCCGAAGTCAAGTCGAAGGAAGAATGGCTTGCAGAtgttaaaaatgaagaatccTCACCTATATCAAGAGCAATGgctgaagaggaagaaaagctgCAGGTAGCTCGGATAAAGGAAGAGCGCAAACAGGAGGCAGAGGAGGCGCCAAACTTGAATCACACTCAGTTTACCAGATTGGATGATCTTTTAACACAAACCCAACTCTACTCAGAATTTCTCCTGGAGAAAATGGATGACATCACACTTAATGGTGGGGAAGAAGAGTATGAGCCAGCTGGAAAAAAGAATGGCCGTggttcaaaaagaaaagccacTTCACAGTACAATAATAGAAAGGCCTCAAAAGCAGTTGCCGCTATGCTTACAAGAtctaaagaaaatgagaagactGAAGATATGAACCTGAGTGAGGAAGAAAGAATTGAGAAAGAGCAGAAAGAGCTTATACCATTGTTGACAGGTGGAAAGTTGAAGCCTTATCAACTAAAGGGTGTAAAGTGGTTGATTTCATTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGCCTTGGGAAGACAATCCAGACTATTGGTTTCCTTGCACACCTAAAAGGGAAAGGACTGGATGGGCCATACTTGATAATTGCTCCTCTTTCAACTCTTTCAAATTGGGTGAATGAGATTTCTAGGTTTGCACCATCACTATCTGCTATTATCTACCAtgggaacaagaaagaaagggatGAAATTCGAAGAAAACATATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTGGTTACATCTTATGAGGTTGCAATGAACGATGCTAGGAGATATTTCAAATCATACCATTGGAAATATGTTGTTATTGATGAGggACACAGGCTCAAGAACTCAAATTGCAAATTAGTGAAGATGTTGAGATTCCTAAGTGTAGAAAATAAGCTTCTATTAACTGGTACACCTCTTCAGAATAACTTGGCTGAGCTATGGTCGTTGTTAAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTCAATTTGTCCGGAAAGTCCAATAATGGGGCAACGGAGGAAGACctggaagagaaaagaagagcaGAAGTAGTAGCAAAGCTACATGCAATATTGCGCCCCTTTATTCTGCGTCGGATGAAGGCTGATGTTGAGCAGATGCTGCCACGAAAGAaggagataattttatatgcaaaTCTGACTGAATATCAGAAGAATTTTCAGGACCATTTAGTTAATAGAACATTAGAGAATTATTTGCAAGAAAAATCTGCAACTGGGCGTGGTACAAAAAGGCTTAATAATTTGGTTATTCAGCTTAGGAAGAACTGTAACCATCCTGACCTCTTAGAGTCAGCCTTTGATGGTTCATTGGACTATCCTCCGGTCAATGAGATAGTTGAACAATGTGGAAAATTCCGTTTGCTGGACCGTTTGTTGGCCCGGTTATTTGAACGGCAGCACAAGGTCCTGATCTTCAGTCAGTGGACAAAAATGTTGGATATTatggattattatttttctgaaaaaggCTTTGAAGTTTGCAGAATTGATGGTAGTGTGAATCtggatgaaagaaaaagacagATCAAggaatttaatgatataaatagCAATTATAGAATCTTTCTCCTCAGTACTAGGGCTGGTGGATTGGGAATAAACCTCACTGCAGCTGACACCTGTATTCTTTATGACAGTGATTGGAATCCTCAAATGGATTTACAGGCTATGGATAGATGTCATAGAATAGGCCAAACAAAACCTGTTCATGTTTACAGGCTTGCAACTGCTCAATCTGTGGAGGGTCGCATGCTGAAAAGAGCTTTTAGTAAGTTAAAGCTCGAGCATCTGGTGATTGGAAAAGGGCAGTTTCATCAAGAACGAACAAAGCCCAACAATGTAAATGTCCCAGAGGAAGAAGATCTGTTGGCATTGCTTCGAGAGGAAGAATCTGTCGAAGACAAAATGATACAGACAGATATTAGTGATGACAACTTGCAGAAGCTCTTGGATCGCAGTGATCTTACCGGTGATGGTCCGGTCAGTACGGTTCCTCTTAAGGGGCCTGGGTGGGAGGTGGTTATTTCGGGGACTGGCAACATGCTTTCTACTCTTAACAGCTA 2234 0.3796 MASKKEAKEESVESPTSVLEDEDTCGVKAEVKSKEEWLADVKNEESSPISRAMAEEEEKLQVARIKEERKQEAEEAPNLNHTQFTRLDDLLTQTQLYSEFLLEKMDDITLNGGEEEYEPAGKKNGRGSKRKATSQYNNRKASKAVAAMLTRSKENEKTEDMNLSEEERIEKEQKELIPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWVNEISRFAPSLSAIIYHGNKKERDEIRRKHMPRTIGPKFPIVVTSYEVAMNDARRYFKSYHWKYVVIDEGHRLKNSNCKLVKMLRFLSVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKSNNGATEEDLEEKRRAEVVAKLHAILRPFILRRMKADVEQMLPRKKEIILYANLTEYQKNFQDHLVNRTLENYLQEKSATGRGTKRLNNLVIQLRKNCNHPDLLESAFDGSLDYPPVNEIVEQCGKFRLLDRLLARLFERQHKVLIFSQWTKMLDIMDYYFSEKGFEVCRIDGSVNLDERKRQIKEFNDINSNYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHLVIGKGQFHQERTKPNNVNVPEEEDLLALLREEESVEDKMIQTDISDDNLQKLLDRSDLTGDGPVSTVPLKGPGWEVVISGTGNMLSTLNS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00722 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 415 IPR027417 -
Bva08g00722 744 CDD SF2_C_SNF 497 631 - -
Bva08g00722 744 MobiDBLite consensus disorder prediction 1 15 - -
Bva08g00722 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 702 IPR027417 -
Bva08g00722 744 MobiDBLite consensus disorder prediction 113 140 - -
Bva08g00722 744 Gene3D - 421 715 IPR027417 -
Bva08g00722 744 PANTHER SNF2/RAD54 HELICASE FAMILY 4 743 - -
Bva08g00722 744 Coils Coil 742 744 - -
Bva08g00722 744 Coils Coil 155 175 - -
Bva08g00722 744 PANTHER BNAC07G16550D PROTEIN 4 743 - -
Bva08g00722 744 MobiDBLite consensus disorder prediction 1 24 - -
Bva08g00722 744 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 672 IPR001650 -
Bva08g00722 744 Gene3D - 149 414 IPR038718 -
Bva08g00722 744 Coils Coil 53 75 - -
Bva08g00722 744 Pfam Helicase conserved C-terminal domain 510 621 IPR001650 -
Bva08g00722 744 Pfam SNF2-related domain 188 485 IPR000330 GO:0005524|GO:0140658
Bva08g00722 744 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 365 IPR014001 -
Bva08g00722 744 SMART helicmild6 537 621 IPR001650 -
Bva08g00722 744 SMART ultradead3 181 376 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00722 Bva-Chr8 3734590 3741336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00722 156 642 RAD5 or RAD16-like Gene Family AT1G02670 25.939 8.38e-42 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva08g00722 SNF2_N 1.6e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00722 K19001 - qsu:111991807 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00722 08 3734590 3741336 Bva08g00722 08 3734590 3741336 ECH