Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00720 ATGGGAGACTACAACGATGCTTTCATGCGCAACCAAAACGCCGCCGTCCAGGCCCGTACCAAAGCACAGAACCGCGCCAATGTCCTTCAACTCAAGCTGATTGGACAAAGTCACCCAACTGGTCTCACAAACAATCTTCTGAAACTCTTTGAGCCTAGGCCTCCGTTAGAGTATAAGCCACCCccggaaaaaagaaaatgtcctCCATTAAACGGTATGGCACAATTTGTAAGTAAGTTTGCTGAGCCTGGAGATCCAGAATATGCTCCACCTGTTCAAAAAGCTGAAACTCCGGCTCAAAGAAGAGCTAGAATACACAAGTTAAGACTGGAGAAAGGAGCAGCAAAGGCAGCAGAGGAGCTTGAAAAATATGATCCACATAATGATCCAAATATATCAGGAGATCCATTCCGGACACTGTTTGTTGCCAGAATTAGTTATGAAGCATCTGAGAGCAAAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTGGTTACTGACAAAGAGACAAATAAACCTAAGGGTTATGCTTTCATTGAGTATATGCATCAACGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAGATTGAGGGTAGAAGGGTGCTGGTGGATGTTGAACGTGGGAGGACTGTGCCAAATTGGCGACCTCGACGACTAGGTGGTGGGCTTGGTACTAGTAGAGTAGGGGGTGAAGAAGTTAATCCACGATATCCTGGGagGGAACAAGTGCAGTCAGGACCTTCTCATTCTGAAGAGCCCAGAGTGCGGGAGGATCGCCATGGTGACCGGGATAGAGAAAAATCCCGCGAAAGAGGCAGAGACAGAGATAGAGAAAGGGAGCGATCTCGTGAACTCTCTCATGAAAGAGGTAGGGATAGGGACCGAGATTATCGAGAGGATAGACACCACAGGGACCGAGATAGGAATAGGGACAAAGACAGAGATAGGGAAAGAGATAGAGATCGAGGCCGTGACCGAGATAGAGCACGAGGTCGTGATCGAGATCGCGATCGTGGTCGGGATCGAGACAAGGACCGTGAACGTCATCGTGAGAAGGATAGGGATTATGAAGTTGGGGACCCTGATAGAGGACGCTCACATGATAGGGAGTCTGATTATGATCGTGTTGAATCTAAACACGAGAGGGAGAGACACAGTGAAAAGGAGCGAGATTATGAACCTGAGGATGATCGTGGGTGGTATAATCAACCTGAGTATGGAAACAGACATGCAGACCCTGATCATGATCCTGAGCAGTATGATCACTATGAGCATCATCGAGGAAGGAGCCATTACGATCATGGAGATGATCATGACCATTACAATCAATATCCTGACCATGACCGAATGGAAAATGACTACCGTACAGAACGTGCAGCATCTGAATCCCGGGAAAGGGAGAGAAATCGCGATACTCGGGAGCTAGGAGTCTG 1457 0.4674 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPLNGMAQFVSKFAEPGDPEYAPPVQKAETPAQRRARIHKLRLEKGAAKAAEELEKYDPHNDPNISGDPFRTLFVARISYEASESKIKREFESYGPIKRVRLVTDKETNKPKGYAFIEYMHQRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGEEVNPRYPGREQVQSGPSHSEEPRVREDRHGDRDREKSRERGRDRDRERERSRELSHERGRDRDRDYREDRHHRDRDRNRDKDRDRERDRDRGRDRDRARGRDRDRDRGRDRDKDRERHREKDRDYEVGDPDRGRSHDRESDYDRVESKHERERHSEKERDYEPEDDRGWYNQPEYGNRHADPDHDPEQYDHYEHHRGRSHYDHGDDHDHYNQYPDHDRMENDYRTERAASESRERERNRDTRELGV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00720 485 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Bva08g00720 485 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Bva08g00720 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Bva08g00720 485 PANTHER - 1 364 - -
Bva08g00720 485 Gene3D - 125 250 IPR012677 -
Bva08g00720 485 MobiDBLite consensus disorder prediction 258 485 - -
Bva08g00720 485 SMART rrm1_1 139 212 IPR000504 GO:0003723
Bva08g00720 485 MobiDBLite consensus disorder prediction 215 485 - -
Bva08g00720 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Bva08g00720 485 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 364 - -
Bva08g00720 485 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00720 Bva-Chr8 3720725 3726007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00720 138 186 C2H2 Transcription Factor Family AT2G19380 36.735 3.46e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00720 K11093 - gmx:100800903 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00720 08 3720725 3726007 Bva08g00720 08 3720725 3726007 ECH