Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00714 ATGACGACCCGAATAGCACCGGGAGTGGGAGCGAACTTGCTGGGCCAACACTCGGCTGAGAGGAATCAAGATGCTACTGCTTATGTCGGCAATCTTGATCCCCagGTTGCTGAGGAGTTACTGTGGGAACTATTTGTTCAAGCTGGTCCTGTTGTTAATGTATATGTTCCAAAGGACAGAGTGACCAATCAACATCAAGGTTATGGATTTGTTGAATTTCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAATATGATTAAACTTTACGGGAAACCTATACGTGTAAATAAGGCAACTCAAGATAAAAAGAGCTTGGATGTGGGGGCAAATCTTTTCATTGGAAACCTTGATCCTGATGTAGATGAGAAGCAATTGTATGACACTTTCAGTGCATTTGGAGTCATCGTTACAAATCCAAAGATAATGAGAGATCCTGAGACTGGAAACTCCCGTGGTTTCGGCTTTATTAGCTATGATTCATTTGAAGCATCTGATGCAGCTATTGAGGCAATGAATGGACAATATCTATGCAACCGTCAGATATCAGTTTCATATGCATATAAGAAAGACACTAAAGGGGAAAGGCATGGCACTCCAGCAGAGAGAGTTTTGGCTGCAAGCAATCCAACTGTACAGAAGAGTAGGCCGCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAGTGTTCCTCAGGCTACTAGTACCATCAGCACTCCCGTGCCTCCTCGCCCCTTCGGAAACGGAGCTGTTCCTAGTGCTATTCCCGCCCTCCGTCCACCACCCCCTCAAGGCGCACCTTTTCCCCCTATGCAGGTAGCTGGGCAACCTGCATGGCATCAACAGCAACCAGGTCAACCAATCCCACCGCATGTAATGCCTCCACCCTCCCTCCAGCAGTTTAGGCCACCTCCCCCTCCACATGCAGTTCAGGTTCAGGGTCCTCCCAGGCCACTGCCACCGCCCACAGGACTGGCAGGCCAACCAAATATTTGGAGACCAGCACCACCCCCTCAGCCGCAGCAACAAGGTGTAAGACCCCCAATGCCTCAGTCCTCAATGCCACTGCCTCATAATcctccacctccacctccTCCAAGTTG 1112 0.4802 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVAEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKQLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQISVSYAYKKDTKGERHGTPAERVLAASNPTVQKSRPHTLFASGPPTLPSVPQATSTISTPVPPRPFGNGAVPSAIPALRPPPPQGAPFPPMQVAGQPAWHQQQPGQPIPPHVMPPPSLQQFRPPPPPHAVQVQGPPRPLPPPTGLAGQPNIWRPAPPPQPQQQGVRPPMPQSSMPLPHNPPPPPPPS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00714 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Bva08g00714 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Bva08g00714 370 CDD RRM2_SF3B4 111 193 IPR034159 -
Bva08g00714 370 CDD RRM1_SF3B4 28 100 IPR034158 -
Bva08g00714 370 Gene3D - 107 204 IPR012677 -
Bva08g00714 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Bva08g00714 370 MobiDBLite consensus disorder prediction 248 273 - -
Bva08g00714 370 MobiDBLite consensus disorder prediction 212 370 - -
Bva08g00714 370 PANTHER TRANSFORMER-2-RELATED 1 357 - -
Bva08g00714 370 Gene3D - 16 106 IPR012677 -
Bva08g00714 370 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 357 - -
Bva08g00714 370 MobiDBLite consensus disorder prediction 286 370 - -
Bva08g00714 370 SMART rrm1_1 113 187 IPR000504 GO:0003723
Bva08g00714 370 SMART rrm1_1 26 99 IPR000504 GO:0003723
Bva08g00714 370 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Bva08g00714 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Bva08g00714 370 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00714 Bva-Chr8 3693699 3698188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00714 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 28.788 1.06e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00714 K12831 - mnt:21397752 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00714 08 3693699 3698188 Bva08g00714 08 3693699 3698188 ECH