Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00712 ATGCCGGTTGATTTAGATAACTCTCCTACAGCTTCAGGGGAAGCTAGCGTCTCTTCTTCGGGCAATCAGACAGTACCTCAAAAGTCCACCgctaagaaaaagagaaacctTCCAGGAATGCCAGATCCAGACGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTCTGGCTACAAACCGATTTGTATGTGAAATTTGCAACAAAGGATTTCAGAGGGATCAGAATCTTCAACTTCATCGACGAGGTCACAATCTGCCATGGAAGCTCAGGCAGAGGTCGAGCAAAGAGGTGAGAAAGAGAGTTTACGTCTGTCCGGAGCCAACCTGTGTCCATCATGATCCCTCCAGAGCTTTGGGTGATCTCACTGGGATAAAGAAGCATTTCTGTAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCAAAGAAATATGCGGTGCAGTCAGATTGGAAGGCTCACTCTAAAATTTGTGGTACCAGAGAGTACAAATGCGATTGTGGGACTTTGTTTTCGAGGAGGGACAGCTTTATCACGCACAGGGCGTTTTGCGATGCCTTGGCAGAGGAGAGTGCAAGAGGTCAGACTCAGACGCCGGGCCAGACACAGACTCAGGCTGCTGCAAAGCCTGATTCAAAGCCAGACACGAAAATTATAACCGGTGATTCATCACCGCCGGCATCATCACCACCACCTCCTGCTCCGGCTGCTCCTGCGCAGTCAGATAGTGTCATCCCCTCTGTTGTGCAGGCGCAAAACCCAGAAAACCCCCCACAAGTTACAGAGGAACAACAACCTCAGGCCACCACTGCTGCCCTAAGTGGGAGCTGTAGCAGTAGCAGCAGCACCGGCGCCTGCTCAACAAGCAATAGCGGTACCAGCAGTAGTGTATTTGCTAGTTTGTTTGCTTCTTCACCTGCATCTGCCAACCTACAATCTCCACAAGCACCTGCATTTACTGAGCTAATTCGAGCCATGACACATCAAGATCGGCCCGCAGACCTCACGGGTCCTGCATCTTCCGAGCCCATTTCTCTCTGCCTCTCCCCCAATCCGGGGTCATCCATTTTTGGAACAGGAGGCCAAGAGCGTCGGCAGTATGCCCCACCACCACAGCCAGCAATGTCTGCCACGGCCTTGCTACAGAAAGCTGCTCAAATGGGTGCAGCTGCTACAAATGCCTCATTGCTCCGTGGGCTTGGTTTAGTGTCGGCTtcagcttcatcttcatcgGGTCAGCAAGATAATTTGCAATGGGGTCAGCGACAAGTAGAAGCAGAGAATGCGTCAGTTCCTGCAGGACTTGGACTTGGGCTTCCTTCTGATGGTAGCTCTGGACTAAAGGAATTAATGATGGGAACTCCTTCCATGTTTGGTCCAAAGCAAACAACCCTTGATTTTCTTGGATTGGGGATGGCTGCTGGCGCCACGCCAAGTGGAGGCTTGTCAGcacttattacatcaatgggTGGTGGTGGTCTGGATGTTTCTGCTGCCGCAGCATCTTTTGGCAGTGGAGAGTTCACTGGGAAAGATATTGGAAGGAGCTCATG 1556 0.4968 MPVDLDNSPTASGEASVSSSGNQTVPQKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARGQTQTPGQTQTQAAAKPDSKPDTKIITGDSSPPASSPPPPAPAAPAQSDSVIPSVVQAQNPENPPQVTEEQQPQATTAALSGSCSSSSSTGACSTSNSGTSSSVFASLFASSPASANLQSPQAPAFTELIRAMTHQDRPADLTGPASSEPISLCLSPNPGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGLGLVSASASSSSGQQDNLQWGQRQVEAENASVPAGLGLGLPSDGSSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGATPSGGLSALITSMGGGGLDVSAAAASFGSGEFTGKDIGRSS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00712 518 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Bva08g00712 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bva08g00712 518 MobiDBLite consensus disorder prediction 226 240 - -
Bva08g00712 518 MobiDBLite consensus disorder prediction 192 291 - -
Bva08g00712 518 MobiDBLite consensus disorder prediction 244 291 - -
Bva08g00712 518 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bva08g00712 518 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 518 - -
Bva08g00712 518 MobiDBLite consensus disorder prediction 9 31 - -
Bva08g00712 518 Gene3D Classic Zinc Finger 41 107 - -
Bva08g00712 518 Gene3D Classic Zinc Finger 115 194 - -
Bva08g00712 518 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 518 - -
Bva08g00712 518 MobiDBLite consensus disorder prediction 192 211 - -
Bva08g00712 518 SMART c2h2final6 61 83 IPR013087 -
Bva08g00712 518 SMART c2h2final6 102 132 IPR013087 -
Bva08g00712 518 SMART c2h2final6 137 157 IPR013087 -
Bva08g00712 518 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00712 Bva-Chr8 3679426 3682678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00712 1 518 IDZ Gene Family AT5G66730 57.486 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva08g00712 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00712 K25869 - gmx:100806404 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00712 08 3679426 3682678 Bva11g01627 11 14963682 14967016 BWGD
Bva08g00712 08 3679426 3682678 Bva08g00712 08 3679426 3682678 ECH