Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00705 ATGAGCCACCATCATATTGATGATGATATGGTATTCATCTCTCAACTATATCCTGGTTCGTACACAGAAATGACCACACAAGgaGAGACAAAGTCACGACGACGTCGTAATAAGAAGAAAGGAGCACAGAATGAATCGGCGGCGGCCAGGAAGAGGAAGCTGAGTGCAGAGCAAGTTAAACTTCTTGAACTGCACTTCGGGAACGAGCATAAATTAGAGTCTGAAAGAAAGGACCGACTGGCTTCTGAACTGGGCTTGGATCCTCGGCAAGTGGCTGTTTGGTTCCAAAACCGGAGGGCCCGGTGGAAGAACAAGAAGTTGGATGAAGAGTACTCCAGCCTTAAAAAACTCCACGAAACCACCATCGTCGAGAACTGCCACCTTCAAAACGAGGTGTTGAAGTTAAAGGAGAAACTTTCAGAGGCCGAGAAAGAGAACCAGCGACTGCGAGAGAGTGGGAGCAACAGCCCAACTTCATCACAAACAGTGCAGTCAGTGGGAGCTGTGGAGCCTCCATTTTTGGGGGAGTTCGGAGAAGTATACGACTATGATATGTTTTCTATGCCGGAGACTCATTACATCAACGGCATGGAATGGGTAAATCTATACATGTG 614 0.4723 MSHHHIDDDMVFISQLYPGSYTEMTTQGETKSRRRRNKKKGAQNESAAARKRKLSAEQVKLLELHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLDEEYSSLKKLHETTIVENCHLQNEVLKLKEKLSEAEKENQRLRESGSNSPTSSQTVQSVGAVEPPFLGEFGEVYDYDMFSMPETHYINGMEWVNLYM 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00705 204 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Bva08g00705 204 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Bva08g00705 204 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Bva08g00705 204 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 203 - -
Bva08g00705 204 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 203 IPR045224 GO:0003700
Bva08g00705 204 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Bva08g00705 204 Pfam Homeodomain 51 104 IPR001356 GO:0003677
Bva08g00705 204 Gene3D - 41 113 - -
Bva08g00705 204 MobiDBLite consensus disorder prediction 23 52 - -
Bva08g00705 204 MobiDBLite consensus disorder prediction 151 165 - -
Bva08g00705 204 Coils Coil 132 152 - -
Bva08g00705 204 SMART HOX_1 48 109 IPR001356 GO:0003677
Bva08g00705 204 SUPERFAMILY Homeodomain-like 51 113 IPR009057 -
Bva08g00705 204 MobiDBLite consensus disorder prediction 143 165 - -
Bva08g00705 204 CDD homeodomain 50 106 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00705 Bva-Chr8 3644892 3646948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00705 1 204 Homeobox Transcription Factor Family AT4G36740 52.074 2.36e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bva08g00705 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00705 K09338 - mnt:21392390 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00705 08 3644892 3646948 Bva11g01634 11 15001100 15003169 BWGD
Bva08g00705 08 3644892 3646948 Bva08g00705 08 3644892 3646948 ECH