Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00689 atggCTTCTCAGGGCATGAATGTCATCCTCAATcgctttgtttttgttggtgCAATTATGACCCTCTACGCCGCAAGCCTTAGTGCCTACAATATGAATGCTATTGATAATTGCTGGAGATGGAACCCAGAATGGCGAAGACATCGCCAACAACTTGCGACCTGCTCTGTTGGATACGCAGGCAAGATGAGCAACAACATCGGGAAAGGCCTCATCCACTATAAGGTAACTGATCCCAGTGACAACCCAATTATCCCAAAACCGGGCACCTTGAGATACGGAGCAAGTGTGATTCAAGGAAAAGTATGGATCACATTCCAAAGAGACATGCATATTAAGCTCCAGAGACCCCTCCTTATTAGCAGCTTCACCACCCTCGATGGTCGAGGCGTTAACGTTCACATTGCTGATAATGCTTGCTTGTTGATCTTTAAGACAAGCAACATAATCATCCATGGCCTTCGGATCCATCACTGCAAGCCTCAAGGCCCGGGCAGCGTGATGGGTCCTGAAGGGAAGGTGATTCCACTGGGTCACGTTGATGGGGACGCAATCAGATTGGTTACGGCTTCAAAGATTTGGATTGACCATAACACCCTCTACGATTGCCAAGATGGTCTTCTCGACGTCACTCGTGGCTCCACCGATGTGACCATCTCCAACAACTGGTTCAGAGAGCAGAACAAGGTTATGCTTCTCGGGCACGACGATGGTTACATTAGGGACCGGAACATGAAGGTAACCGTTGTCTACAACCATTTTGGGCCACAGTGCAGCCAGCGCATGCCAAGGATCCGCCATGGGTATGCGCACGTTGCCAACAATCTATACATGGGATGGGTGCAATACGCCATTGGTGGAAGCAAGGCACCCAGCCTCAAAAGCGAAGCCAACCTCTTCATAGCACCAAAATCTGGGAGTAAAGAGGTGACATGGAGGAAAGGCAATCCGGAAGAAAATGTAGAGACATGGGAATTTTATTCGGCGAGGGACGTTTTTGAAAACGGTGCCTTCTTCAGGGAAACAAAATCTGTTGGGGCGAAGCCCAATTACAACCAGGAGCAGATATTCAAAGTTGTTGATGCCAAATATGTGAGGTCATTAACAAAGTCTTCAGGCGCATTACGTTGCAGTAGAACCTCTAGATGCTG 1151 0.4744 MASQGMNVILNRFVFVGAIMTLYAASLSAYNMNAIDNCWRWNPEWRRHRQQLATCSVGYAGKMSNNIGKGLIHYKVTDPSDNPIIPKPGTLRYGASVIQGKVWITFQRDMHIKLQRPLLISSFTTLDGRGVNVHIADNACLLIFKTSNIIIHGLRIHHCKPQGPGSVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFREQNKVMLLGHDDGYIRDRNMKVTVVYNHFGPQCSQRMPRIRHGYAHVANNLYMGWVQYAIGGSKAPSLKSEANLFIAPKSGSKEVTWRKGNPEENVETWEFYSARDVFENGAFFRETKSVGAKPNYNQEQIFKVVDAKYVRSLTKSSGALRCSRTSRC 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00689 383 Gene3D - 32 376 IPR012334 -
Bva08g00689 383 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Bva08g00689 383 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Bva08g00689 383 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Bva08g00689 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Bva08g00689 383 PRINTS Pollen allergen Amb family signature 324 348 IPR018082 -
Bva08g00689 383 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Bva08g00689 383 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Bva08g00689 383 SMART amb_all 109 306 IPR002022 -
Bva08g00689 383 SUPERFAMILY Pectin lyase-like 28 376 IPR011050 -
Bva08g00689 383 PANTHER PECTATE LYASE 13 380 - -
Bva08g00689 383 PANTHER PECTATE LYASE 18-RELATED 13 380 IPR045032 GO:0030570
Bva08g00689 383 Pfam Pectate lyase 120 300 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00689 Bva-Chr8 3564497 3565842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00689 63 315 Polysaccharide Lyase AT5G09280 71.146 2.77e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00689 K01728 - gmx:100780437 624.394