Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00684 atGGGTTGGTTTACCAAGTTGCTTAAAGGCTCCaaccataaaatttatggaggACAATATCACGGGAAATATGGAGATGACAGAATTTGGGATAATCATCACACCACTACGGATGAATTGACAGATGttgagaaagaagagattGATTGGGCAATTGCACTCTCTCTAGCAGAGGAGGaccagaaagggaaaaaagttATCGAGGATAAATCTGAGTCAGAAGACGAAGAGCTTTGCAAAATTGAAGAGGAGGAAGATGAACATCCTGCTAAAATTCAAGATGCGGAAGACGAATCTCCTGCTACAGTTAGACACGAGGAAGATGAACATCTTTCTAAAGTTCAACTTGAAGAAGATGAACAGCTTGCCAGGGCACTTCAAGAAAGTTTAAACGTGGGCTCTCCTCCCCGATATGACTCTGGCTCTATATTTCAACCTTATCCACTGCACTTTCCACCTGGATACAGGATCTGTGCTGGATGCAACACTGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGAAGCAGTCTGGCATCCAGAATGTTTCCGCTGCCATATTTGTAATCTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCCTTACCATAAATCCTGCTATAGGGAGCAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCTACAAATTCAGCCGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAGAAATACTGTCCATCGCATGAGCGTGATGGCACTCCTCGATGTTGTAGCTGTGAACGAATGGAGCCAAGGGACACGAAATATCTTTTGCTTGATGATGGTAGAAAGCTATGTCTAGAGTGTCTTGACTCTTCAATTATGGATACTCATGAGTGCCAGCCTCTTTACCTTGAAATACAAGAATTTTATGAAGGATTAAATATGAAAGTTGAGCAGCAGGTTCCCATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCatggaaggagaaaagaatGTTCATCACCACTTACCAGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAGACGGTTACCAATATTTTAAGGAGGCCGAAGATAGGAGCTGGTTACCGGGTCATAGACATGATAACTGAACCTTACAGGCTTATCCGTCGATGTGAAGTAACTGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTATTGACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACCTGAGTCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATGTATTCTGGATCTGGTAATGATGGCGCATCATCGTCTTCCTCGTCCTCATCTTCGCCTTCTTCCTCTGCCACCTCATCAAAGAAAGGCAAACGATCTGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATCGAGGCAGATACCTCATCAGCATATGGAGATGGATTCAGATTGGGTAACCAGGCCGTGCTCAAGTATGGCCTCAGAAGTACTCTCGACCATATTCGGCTGACAGGAAGTTTCCCATGTTG 1580 0.4209 MGWFTKLLKGSNHKIYGGQYHGKYGDDRIWDNHHTTTDELTDVEKEEIDWAIALSLAEEDQKGKKVIEDKSESEDEELCKIEEEEDEHPAKIQDAEDESPATVRHEEDEHLSKVQLEEDEQLARALQESLNVGSPPRYDSGSIFQPYPLHFPPGYRICAGCNTEIGHGRFLSCMEAVWHPECFRCHICNLPITDYEFSMSGNRPYHKSCYREQHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNVHHHLPETRGLCLSEEQTVTNILRRPKIGAGYRVIDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEMYSGSGNDGASSSSSSSSSPSSSATSSKKGKRSDFEKKLGEFFKHQIEADTSSAYGDGFRLGNQAVLKYGLRSTLDHIRLTGSFPC 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00684 526 Gene3D Cysteine Rich Protein 152 215 - -
Bva08g00684 526 Pfam LIM domain 158 213 IPR001781 -
Bva08g00684 526 SMART lim_4 157 209 IPR001781 -
Bva08g00684 526 PANTHER PROTEIN DA1-RELATED 2 1 525 IPR045218 -
Bva08g00684 526 MobiDBLite consensus disorder prediction 84 108 - -
Bva08g00684 526 MobiDBLite consensus disorder prediction 61 108 - -
Bva08g00684 526 Pfam Protein DA1 307 521 IPR022087 -
Bva08g00684 526 CDD LIM_DA1 158 210 - -
Bva08g00684 526 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Bva08g00684 526 Coils Coil 67 87 - -
Bva08g00684 526 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 239 - -
Bva08g00684 526 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Bva08g00684 526 MobiDBLite consensus disorder prediction 447 472 - -
Bva08g00684 526 SMART uim 43 62 IPR003903 -
Bva08g00684 526 SMART uim 117 136 IPR003903 -
Bva08g00684 526 MobiDBLite consensus disorder prediction 447 468 - -
Bva08g00684 526 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Bva08g00684 526 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 525 - -
Bva08g00684 526 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00684 Bva-Chr8 3543065 3548268 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva08g00684 DA1-like 2.9e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00684 - - gmx:100817969 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00684 08 3543065 3548268 Bva11g01649 11 15071782 15076760 BWGD
Bva08g00684 08 3543065 3548268 Bva08g00684 08 3543065 3548268 ECH