Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00680 ATGGAAGTGCTTCCTTGTTCCGGTGTTCAATATGCTGGTGAATCTGATTGCCCTCAGCCTGTAAATGGTGAACAAGTTAAATTGAAAGATGGTCGGCCCAATGAAGGGCATCGAATAGAAAGGCAAGGTGAAGGTCAGGAGACAGTTGGCGATTTATCGATTAATTCTGATTGCCAATGCGGTGTAGCTTCGTGTCCTTACTGTCAAGGAGAAGACCAAAAGGAATCTTGTGGTTTCCATGATTTTGAAGATGATGAGATAAATGAACCTTGCTTAACTTCGGAGAACTCCCTTCCCATTGTGGATACAATTGAAAGTGAATCACCAAACAACATTAGGGAAGGAGAGCTGTCACTTTCTGAACCCACTTGGCTGGAAGGTGATGAATCAGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGTGGGCATTAGATGTGCAAGAGCTGACTGGCcgttgtcaactttgaaagcAAAACCAACTCATGACCggaagaaatattttgtgatattttttcCACACACGAGAAATTATTCTTGGGCTGATATGCTGCTTGTTCGTTCAATCAACGAGTTTCCCCAGCCTATTGCTTACAAGACACACCATGTAGGATTGAAAATGGTGAAAGATTTGACTGTTGCAAGACGGTTTATAATGCAAAAGCTAGTTCTTGGCATGCTGAACATTGTTGATCAATTTCATTTAGATGTCTTAATAGAAACTGCTCGGGATGTGATGGTCTGGAAGGAGTTTGCTATGGAGGCTTCCCGGTGTAATGGTTATTCTGAACTCGGAAGAATGCTTCTAAAGCTGAAGAATAGCATCTTGGAGCGGTACATAAATGCTGACTGGTTGCAGAATTCCTTTCATTCTTGGGTTGAACGATGCCAGAATGCAAATAGTGCTGAATCAATTGAACTGCTGAAGGAGGAATTTTTCGATTCTATTCTATGGACTGATGTCAACACTCTCTGGGAGGGTCCTGTGCAAACAATGTTAGGTTCTCTGTGGAAAACATGGAAGCAGGAAGTAATGAAATGgtttttcatatttccttCCTTATCTAGCAACAAAGACATAGAGCCACAGACTTCTGATAGTTCCTTCCAAGCAAGTCTCCAAGTTTGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAACCAAAGGTTTAGATCCCTCTATAACTCTAGAAACTGGCCATGGGTTCTTTAATAATCAGGAGACCTTGAGAACATTAGCAGCTGAGAGATGTAAACAGGAAGATATTAGGGAGGTACCTTTGGCAACTGATTCACCTAGTAATATGACCAATACATGGAATGAAATTGTAGTTGAGGCTGCAGATTCTGAGTTCTTGCGTACCAGAGGCATGGAATTGACACCTATAATTGAAACTGTTAGTGCAAAATCTGTGGAACTTGGTAGTAAGAATCGGCAATGTATAGCTTATATTGAATCCAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTTTACTGTTGTGTGCATTTGGCCTCTCGTTTTATAGGTACCTCAGCAAAAGCACAAAGAACTGTTTCGGTAGATGCTCCAATGTGTGAAGGCACAACTGTTCTTGGTGCTAGATGTAAGCATCGGGCCCTACCCGGCTTTTCATTCTGTAAGAAACACAGGCCCCATACTGAAACAAATCACACCACGGATATCCCCCAGAATACGCTAAAGAGGAAACGTGAAGAAAACTATACTGGTTCTCCGAGCACACTCAGTAAAAATACAGTATTTATGGATGTTGAAAGTCCCCACCAAGTGGATGAAGAGTCGGTCATGGATGATGATGCCTTCCATAAGGTAAGTAACTTAAATGAGAATCCCATTCTTCCTGAAAATGATCATAATGTAACAGAAGCACTTCAGTGTATAGGATCATCTCCCTATGATAACAAGAACCCTTGTTTGGAAACTCCGAAGAGGTATTTCTTATATTGTGATAAGCACCTTCCAAGCTGGCTTAAACGTGCAAGGAATGGGAAGAGTAGGATAATATCAAAAGAAGTGTTCACAGAACTTCTGAAGGATTGCTTCTTACCGGAGCAAAAGGCACATCTACATAAAGCATGTGAGCTTTTTTACAGGCTATTCAAAAGCATTTTATCCCTAAGAAATCCAGTTCCTAAGGAAGTTCAATTCCAGTGGGCTCTTTCTGAAGCTTATAAAGATACTAGTGTTGGGGAATTTTTTACAAAGCTGGTTCAtagtgaaaaagagagaatcaaAATGATGTGGGGATTCAATGATGACAAAGATGTTCCCTCACTCATGGAAGAACCACCTCGCTTGCCATCCACAGTTGATGATAGctttgataatgataatgtcATTAAGTGTAAATTATGCTCTGCAGAATTTCTTGATGACCAAACGCTTGGCAGCCATTGGATGGATAGTCATAAAAAGGAAGCACAATGGCTATTTAGAGGTCATGCATGTGCCATTTGTCTGGACTCTTTTACTAACAAGAAAAACTTGGAAGCCCATGTTCAGGAGAGACACCATGTGCAATTTGTTGAACAGTGCATGCTTCTACAATGCATTCCTTGTGGTAGCCATTTCGGAAATATCGACCAATTATGGCTGCATGTTCTATCAGTTCACTCTGTTGAGTTTAAGGCATCAAAAGTTTCTGAGCAACAAAGTTTGCCTACTGCTGGGGATTCTCCAGTACAACTTGAGCAGCAGTGTAATTCAGCCTCTTTGGAGAATAATTCTGAGAATTCTGGTGGTTTGAGGAAGTTTATTTGCAGGTTTTGTggattgaaatttgatttactACCTGATCTTGGTCGCCATCATCAAGCTGCTCATATGGGTCCGAATCTAGTTGGTAGTAACCCTTCTAAGAGGGGAGTTCGTTATTATGCATATAGATTAAAATCTGGCAGGCTTAGTcgtccaaaatttaaaaaaagtttggcAGCAGCGTCATATAGGATCCGAAGTAGGGCTAGTGCCAATTTAAAGAAACGTATTCAGGCAACAAAGTCACTTAGGATGGGGGAGATACCAGTAGAACCCCATGCAAATGGAACAACAAATGTTGGTAGGTTGGCTGAATATCAGTGCTCTGCAGTTGCTAAGATTCTGTTTTCTGAGATTCAGAAAACTAAGCCTCGGCCTAAAAATCatgatattttatcaattgttCGCTCTTCTTGCTGCAAAGTTAGTCTTAGAGCCTCACTAGAGGAGAAATATGGAATTCTGCCTGAAAAGCTGTATCTGAAGGCAGCAAGGCTTTGCAGTGAGCATAACATTCCAGTGAGCTGGCACCAAGAGAGCTTTGTTTGTCCTAGAGATTGCAAGGCACCAAAGGACCAAGTATTGCTCCCTCTCGTGGCCTCTATTCCTAATGGTTTTGTATGGAAAAATTCTGGAGCTATATCTGTTCCTGCAAGTGATGAATGGGAGGTGGATGAGTTTCACTACATTATCAATTCACACCATTTAAGGCCAGGGTCATTCCAAAAGGCTGTGGTCTTGTGTGATGATATAAGCTTTGGGAAAGAATCAGTTCCAGTTATTTGTGTAGTAGATCAGGAACTTTTGGATTCTCTTCATGCTCAAGCTGATGGGTCCAATGCGGGAAGTGTAAATCTCCCTATGCCCTGGGAGAGCTTTTCCTATGTTACGAAGCCTATACTTGATCAATCAAATGGTCTTGATTCAGAGAGTCTGCAATTGGGATGTGCCTGCTCATATTCTATATGTTGTCCTGAAACATGTGATCATGTATACCTTTTTGATAATGACTATGATGATGCAAGGGACATTTTTGGGAAACCAATGCGTGGCAGGTTCCCATACGATGAGAATGGTCGAATAATATTGGAgGAAGGTTACCTTGTCTATGAATGTAACCATATGTGCCGATGCAATAAATCCTGTCCAAACAGAATTTTGCAGAATGGAGTTCGAGTTAAATTGGAAGTCTTTAAAACAGAGAAGAAGGGATGGGCAGTAAGAGCTGGTGAAGCTATATTGCGTGGCACTTTTGTGTGCGAGTATATCGGAGAGGTTTTAGATGAGAAGGAATCACACGACAGGCGCAAGAGTTGTAACAAAGAAAGTTGCAGTTATTTCCTTGACATTAATGCTCATATCAATGATATGAGTAGATTGTTTGAAGGACGGGATCGATATGTAATTGATGCAAGTAGATATGGAAATGTCTCAAGATTCATCAATCATAGCTGCTCTCCCAATCTTGTGAGTCACCAAGTTCTTGTAGAAAGCATGGATTGCCAGCGTGCACATATTGGTCTCTATGCAAATCGAGATATTGCTTTGGGTGAAGAACTGACATTTGACTATCACTATGAGCTTGTGCCCGGAGAAGGATCTCCGTGCCTATGTGGGTCTTTGAAATGCCGAGGCCGTATAATTGAATACATGTGGTG 4472 0.4036 MEVLPCSGVQYAGESDCPQPVNGEQVKLKDGRPNEGHRIERQGEGQETVGDLSINSDCQCGVASCPYCQGEDQKESCGFHDFEDDEINEPCLTSENSLPIVDTIESESPNNIREGELSLSEPTWLEGDESVALWVKWRGKWQVGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSINEFPQPIAYKTHHVGLKMVKDLTVARRFIMQKLVLGMLNIVDQFHLDVLIETARDVMVWKEFAMEASRCNGYSELGRMLLKLKNSILERYINADWLQNSFHSWVERCQNANSAESIELLKEEFFDSILWTDVNTLWEGPVQTMLGSLWKTWKQEVMKWFFIFPSLSSNKDIEPQTSDSSFQASLQVCRKRPKLEVRRADTHASQVETKGLDPSITLETGHGFFNNQETLRTLAAERCKQEDIREVPLATDSPSNMTNTWNEIVVEAADSEFLRTRGMELTPIIETVSAKSVELGSKNRQCIAYIESKGRQCVRWANDGDVYCCVHLASRFIGTSAKAQRTVSVDAPMCEGTTVLGARCKHRALPGFSFCKKHRPHTETNHTTDIPQNTLKRKREENYTGSPSTLSKNTVFMDVESPHQVDEESVMDDDAFHKVSNLNENPILPENDHNVTEALQCIGSSPYDNKNPCLETPKRYFLYCDKHLPSWLKRARNGKSRIISKEVFTELLKDCFLPEQKAHLHKACELFYRLFKSILSLRNPVPKEVQFQWALSEAYKDTSVGEFFTKLVHSEKERIKMMWGFNDDKDVPSLMEEPPRLPSTVDDSFDNDNVIKCKLCSAEFLDDQTLGSHWMDSHKKEAQWLFRGHACAICLDSFTNKKNLEAHVQERHHVQFVEQCMLLQCIPCGSHFGNIDQLWLHVLSVHSVEFKASKVSEQQSLPTAGDSPVQLEQQCNSASLENNSENSGGLRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVGSNPSKRGVRYYAYRLKSGRLSRPKFKKSLAAASYRIRSRASANLKKRIQATKSLRMGEIPVEPHANGTTNVGRLAEYQCSAVAKILFSEIQKTKPRPKNHDILSIVRSSCCKVSLRASLEEKYGILPEKLYLKAARLCSEHNIPVSWHQESFVCPRDCKAPKDQVLLPLVASIPNGFVWKNSGAISVPASDEWEVDEFHYIINSHHLRPGSFQKAVVLCDDISFGKESVPVICVVDQELLDSLHAQADGSNAGSVNLPMPWESFSYVTKPILDQSNGLDSESLQLGCACSYSICCPETCDHVYLFDNDYDDARDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCPNRILQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDEKESHDRRKSCNKESCSYFLDINAHINDMSRLFEGRDRYVIDASRYGNVSRFINHSCSPNLVSHQVLVESMDCQRAHIGLYANRDIALGEELTFDYHYELVPGEGSPCLCGSLKCRGRIIEYMW 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00680 1490 ProSiteProfiles Post-SET domain profile. 1470 1486 IPR003616 -
Bva08g00680 1490 SMART set_7 1331 1469 IPR001214 GO:0005515
Bva08g00680 1490 Gene3D SET domain 1168 1467 IPR046341 -
Bva08g00680 1490 ProSitePatterns Zinc finger C2H2 type domain signature. 801 822 IPR013087 -
Bva08g00680 1490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1485 - -
Bva08g00680 1490 ProSitePatterns Zinc finger C2H2 type domain signature. 869 890 IPR013087 -
Bva08g00680 1490 MobiDBLite consensus disorder prediction 15 48 - -
Bva08g00680 1490 Pfam SET domain 1342 1462 IPR001214 GO:0005515
Bva08g00680 1490 Pfam Pre-SET motif 1189 1323 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva08g00680 1490 ProSitePatterns Zinc finger C2H2 type domain signature. 939 960 IPR013087 -
Bva08g00680 1490 MobiDBLite consensus disorder prediction 564 599 - -
Bva08g00680 1490 Gene3D Classic Zinc Finger 800 857 - -
Bva08g00680 1490 SUPERFAMILY SET domain 1177 1476 IPR046341 -
Bva08g00680 1490 MobiDBLite consensus disorder prediction 28 45 - -
Bva08g00680 1490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1485 - -
Bva08g00680 1490 ProSiteProfiles SET domain profile. 1331 1463 IPR001214 GO:0005515
Bva08g00680 1490 Pfam Zinc finger C2H2-type, 3 repeats 835 961 IPR040689 -
Bva08g00680 1490 SMART c2h2final6 799 822 IPR013087 -
Bva08g00680 1490 SMART c2h2final6 937 960 IPR013087 -
Bva08g00680 1490 SMART c2h2final6 867 890 IPR013087 -
Bva08g00680 1490 SMART c2h2final6 833 856 IPR013087 -
Bva08g00680 1490 ProSiteProfiles Pre-SET domain profile. 1252 1328 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva08g00680 1490 ProSiteProfiles Zinc finger C2H2 type domain profile. 937 965 IPR013087 -
Bva08g00680 1490 SMART preset_2 1186 1315 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00680 Bva-Chr8 3497656 3508095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00680 114 1483 C2H2 Transcription Factor Family AT2G23740 52.009 0.0 1380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva08g00680 Pre-SET 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00680 - - gmx:100786757 2258.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00680 08 3497656 3508095 Bva08g00680 08 3497656 3508095 ECH