Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00662 ATGGTGAAAGTCAGGGAGAAATGCCGAGAgacagaaaaacaaatatattggaCAGAATTTACATCCGGCAGACACCAATTTTTCAAGATAATGATAGGCGGTTTCAGGAATCTACTGCGAATCCCAATAAAATTTGTGAGGCATTTCAAGGTGAAATTGTCCGGTTCAGTCAGACTTAGAGGGCCTAGTGGACATGTGTGGAATGTTAAACTTGCAAGAACGGCTGATGATCTCCTTTTCCACAAGGGTTGGAAAAATTTTGCGCAAGATCACAGTTTGGCAGCAGGAGATTTTCTTGTCTTCCGCTACATTGGAGATTCATCTTTCGGTGTCTCTATTTTTGATGAAACAGGGTGTGAGCGAGAAGATGCTTACTTCGTCAAAAAACACACTTGTTGTTCAGGCAATGCTTGCTTCCTgcagaagaaagagaataaatttgtACAAGTTAAAGACCaggagggagagggagaacaGGCGAAGGACAGGAAGCCGTCGAAAGGTGCGAGTAGATCTGCCGGAAAAAAGGTGAGAGAAAGAAACTTGGAAGTTGGAAGTGAGTATATAACTTCTAAAATTGTTGGGACCAGTTATGTGCCCAGAAATTCAAACAGGGTGGACcagatgatgaaagaaaagtcCCATGAAGTTATCGAGTTGACTACTTCAGATTA 674 0.3739 MVKVREKCRETEKQIYWTEFTSGRHQFFKIMIGGFRNLLRIPIKFVRHFKVKLSGSVRLRGPSGHVWNVKLARTADDLLFHKGWKNFAQDHSLAAGDFLVFRYIGDSSFGVSIFDETGCEREDAYFVKKHTCCSGNACFLQKKENKFVQVKDQEGEGEQAKDRKPSKGASRSAGKKVRERNLEVGSEYITSKIVGTSYVPRNSNRVDQMMKEKSHEVIELTTSD 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00662 224 CDD B3_DNA 27 115 IPR003340 GO:0003677
Bva08g00662 224 SUPERFAMILY DNA-binding pseudobarrel domain 20 119 IPR015300 -
Bva08g00662 224 Pfam B3 DNA binding domain 35 116 IPR003340 GO:0003677
Bva08g00662 224 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 9 211 - -
Bva08g00662 224 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
Bva08g00662 224 Gene3D - 19 119 IPR015300 -
Bva08g00662 224 SMART B3_2 27 117 IPR003340 GO:0003677
Bva08g00662 224 MobiDBLite consensus disorder prediction 151 178 - -
Bva08g00662 224 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 211 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00662 Bva-Chr8 3417554 3420610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00662 6 129 REM Transcription Factor Family AT4G33280 41.270 4.07e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva08g00662 B3 5.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00662 - - tcc:18611036 178.718