Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00636 ATGTCATCATCGAATTCTCCGTGCGCTGCGTGTAAGTTTCTCAGGAGGAAATGCACACAAGAATGCGTCTTCGCGCCGTACTTTCCACCGGACAATCCTCAGCGCTTTGCTTACGTCCACAAGGTTTTCGGCGCAAGCAATGTTGCTAAGCTTCTCAACGAGCTCAACGCGGCGCAACGTGACGACGCAGTTAAGTCTTTGGCTTATGAAGCCGAGGCCCGCCTCCGGGACCCAGTCTATGGTTGTGTGGGTCTCATCTCTCTTCTTCAGCACAGGCTCAGGCAGATCCAAGGTGAGCTCAACAATGCCAAGAAAGAGCTAGCAACTTACGTTGGACCTCAGGCATTGCAGACAGTCACTCCCATTCTACCACCTGCTGGAGTCATGCCCCAACAGCACCCAGCTAACTCGTATACCTCCGCCGTCTATCCTTACAACATGCCACCGCCGCCCCCCATGTCGGGTATTACGACGCATAGTGGCCAATTGTTGATTCGTGACTCCcagcaacagcaacagcagcaACATCATCAGATCTTGGAAGCTCAGCAACTGGCTGCGGCTGTGGCGGCAAGAGAGCAGCAAGAGATGTTCCGAACTTATgatcaacaacaacagcagcagcaagaTCTCCTGAGGTTTAATAGTGGATATGTTGTGGGTGGTAGTGGGTTTAACCAAATGTCTACAGCTGCCGCTCCCGCTGATTTGTCGCCGTCACTGGCTCTGGGCACCTTTGACAACACCTACCACATTCAAACTCAGCAGGCAGAACAACATCACCCTCTCGCTCATCAGCTTCAGGCACAGCTAATGCTAACACCACAGCAACCTCAAGCTCAGCAACAAACGCAGCAGTCACAGCAACCACAACAATCCGAAAGCGAGGAGGGCAGGAGTGTGGGTCCTTCTTGTTG 917 0.5027 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHRLRQIQGELNNAKKELATYVGPQALQTVTPILPPAGVMPQQHPANSYTSAVYPYNMPPPPPMSGITTHSGQLLIRDSQQQQQQQHHQILEAQQLAAAVAAREQQEMFRTYDQQQQQQQDLLRFNSGYVVGGSGFNQMSTAAAPADLSPSLALGTFDNTYHIQTQQAEQHHPLAHQLQAQLMLTPQQPQAQQQTQQSQQPQQSESEEGRSVGPSC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00636 305 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Bva08g00636 305 Coils Coil 86 106 - -
Bva08g00636 305 MobiDBLite consensus disorder prediction 275 305 - -
Bva08g00636 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 286 - -
Bva08g00636 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 286 - -
Bva08g00636 305 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00636 Bva-Chr8 3310586 3314033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00636 1 299 AS2 family AT5G66870 51.057 2.71e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva08g00636 LOB 1.9e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00636 08 3310586 3314033 Bva11g01687 11 15265635 15268887 BWGD