Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00618 ATGGCTCGGGACCACGACTACGTCCATGATCGCTACAACGACCACGACCCCCGCCGGCTTTACCACTACCTGGGACTGCAACCTCCCAATGCGGAGGAGGAGGAGCTGGAGGACGACATAACTCTGGCCCAGCTATCTAAGGCTCCTAAACACAAGTCATCTGATTTAACCAAGGACAAACAAAACAAGCAGATGGAGAAGTACAAGCAATTGAACATTCAGAATTCTGTGTCCAACCACGCTGTATCTGGCCATGCAAGCAAGTTTGCAAGCTCTATGAAGGCTGTAGTGGATGGAGCATGCTCTCGTGGTGAGGCCAGGTCTTCTGCTGTCATTCGAGCAGAGGAGGTCCGTACAAAGTTATCAGCGGAATTCCCTAGTTTTGTGAAGTCTTTAGTCAGATCTCATGTTGCCGGTTGTTTTTGGATGGGGCTCCCGGCATTGTTCTGTAAGAGACATTTACCAGATAAGGATATAACTATCACTTTGGAAGATGAATCTGGTAAAGAATACAAGATGAAATACATAGCTTATAAAACAGGATTAAGTGCTGGTTGGAGGCAGTTTTCTGCTGTGCACAAACTGCAAGAGGGGGATGTATTGATCTTCCAATTAGTTGAGCCTATCAAATTTAAGGTTTACATAATAAGGGCTAATGATTTGAATGAATTGGACGGGGCTCTTAATCTTCTACATCTGGACAGTTATACAAAACAAAGGGAGGGAGATAATCCAAATGCTGATGCTGTGGCTCATAATAGCTCAAAAAGAAAGCATGCTAAATATGTTCCCCAAGTTGtccgaaagaaaaaaaggggcAGCGTGCCAAAACTGGCTCCCATAGTTAGAAGGTCTGCAGAACAATCTGAAAATGATAGCGAGGAAGTTCGTTCAGAAGTACTGGAGGCCATCAAACCAATGCTTCCATTCAAAGacgttaaaaattttgagaatttcagTATCCAAATTGATGGAATGACAATAGATGCGGAGCTCCACGATGAAATTCGGATCAACTACTACAAACTCTGCTCCAGTCAGCATGCATATCTCCACGAGAATCTGATTGAGGGCATGAACTATCACCTCATTGTTGgtattatatatgaaattgtaAACATTGCAGATGCCATAAAAACTAGCACAGTTGCTACCTCCCGTGTTGAATTTGCTAAATGGGATAAAACCTTGCTAGCCTTTCAGAATCTGGGGATGAAAGTGGAGTTTTTAAGACTGCGGTTACGCCGGCTTGTAAGCATTGCCTACGAAGAAGAAGGTGCCTCGGAGAGCAGAAGGTACTTGGAGTCCAGAAATGAACACAATCGAGTAGATGACGAAATAAATAACATGGAAACGAAGCTTGAAGAATTGAAAGGAGCGTGTTATTCCTTTGGTGCTTATCTTGAGAGTTTGAAAGGCAAAGCTGAATGCTACCAGTTCAAGTTCCATGAAGAGGTCACTGCTCGATGGTA 1472 0.4226 MARDHDYVHDRYNDHDPRRLYHYLGLQPPNAEEEELEDDITLAQLSKAPKHKSSDLTKDKQNKQMEKYKQLNIQNSVSNHAVSGHASKFASSMKAVVDGACSRGEARSSAVIRAEEVRTKLSAEFPSFVKSLVRSHVAGCFWMGLPALFCKRHLPDKDITITLEDESGKEYKMKYIAYKTGLSAGWRQFSAVHKLQEGDVLIFQLVEPIKFKVYIIRANDLNELDGALNLLHLDSYTKQREGDNPNADAVAHNSSKRKHAKYVPQVVRKKKRGSVPKLAPIVRRSAEQSENDSEEVRSEVLEAIKPMLPFKDVKNFENFSIQIDGMTIDAELHDEIRINYYKLCSSQHAYLHENLIEGMNYHLIVGIIYEIVNIADAIKTSTVATSRVEFAKWDKTLLAFQNLGMKVEFLRLRLRRLVSIAYEEEGASESRRYLESRNEHNRVDDEINNMETKLEELKGACYSFGAYLESLKGKAECYQFKFHEEVTARW 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00618 490 Pfam B3 DNA binding domain 128 218 IPR003340 GO:0003677
Bva08g00618 490 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 35 428 IPR044837 -
Bva08g00618 490 SUPERFAMILY DNA-binding pseudobarrel domain 122 219 IPR015300 -
Bva08g00618 490 Gene3D - 107 221 IPR015300 -
Bva08g00618 490 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Bva08g00618 490 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 35 428 - -
Bva08g00618 490 Coils Coil 433 460 - -
Bva08g00618 490 CDD B3_DNA 126 217 IPR003340 GO:0003677
Bva08g00618 490 SMART B3_2 128 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00618 Bva-Chr8 3201256 3205471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00618 105 244 B3 DNA Binding Superfamily AT3G19184 45.455 1.09e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva08g00618 B3 2.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00618 - - vra:106768002 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00618 08 3201256 3205471 Bva08g00618 08 3201256 3205471 ECH