Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00612 ATGTCGCAGCGGTCGATGCCGGCGCCGTTTTTGACGAAGACGTACCAGCTAGTGGACGATCCCGCCAAGGACGATGTGATATCGTGGAGTAAAAGCGGCAACACTTTTGTGGTTTGGAAGCATGCGGACTTTGCCAAGGATTTGCTTCCCAATTACTTCAAGCACAACAACTTCTCGAGCTTTGTCCGCCAGCTTAACACTTACggATTCAGAAAGATTGTTCCTGACAAATGGGAATTTGCGAACGAGTATTTCAAGCGTGGACAGAAAGAGCTTCTCTCAGAAATCAAACGGCGGAAAACAGTGGGCCAAGTATCGGCACAGGTGTCCGGAGCGGCAAAATCCGGTGGCGGTGGTAACTCTGCATCAAACTCTGGCGGTGATGACACGGGTTCGACGTCTACTTCGTCCCCTGATTCGAAGAATCCGGGATCGGTGGAGACAATGACGACTCAGTATGCGGATTTATCAGGTGAAAACGAGAAACTGAAAAAGGATAACGAACTGCTAAGCTCGGAGCTTGCGCAAGCCAAGAAGCAGTGCGATGAGCTGATAGCTTTCTTGAAGGATTGTCTGAAGGTGGGGCCGGATCAGATCAATCGGATCCTGCGGCAAGGAAGTAGTGGGTCCAGCCTCGATGAAATGGTCGGTCCGGTGCCCGGTCTTACTGTAGAGGATGATGATGACGAAAACGCGGTAGGTGATGAGATGGAGAGGAAAGGTGGAGaaactttgaaactttttgGGGTTTGGTTGAAAGGGAAGGATGATGATGGTGATGGCGAGGAGAAAATCTCCCACAAGAGAAGGCGCCAAGATCAAAGCAGCTTCAGTGGGCCTCACGATCACGCCAAGGAGTTGAAGGCTGTCCCTGTGAATGGCACGATCAAGAGTAGCAAGGTCTGCAACTG 911 0.5016 MSQRSMPAPFLTKTYQLVDDPAKDDVISWSKSGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLSEIKRRKTVGQVSAQVSGAAKSGGGGNSASNSGGDDTGSTSTSSPDSKNPGSVETMTTQYADLSGENEKLKKDNELLSSELAQAKKQCDELIAFLKDCLKVGPDQINRILRQGSSGSSLDEMVGPVPGLTVEDDDDENAVGDEMERKGGETLKLFGVWLKGKDDDGDGEEKISHKRRRQDQSSFSGPHDHAKELKAVPVNGTIKSSKVCN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00612 303 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g00612 303 Gene3D - 2 101 IPR036388 -
Bva08g00612 303 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 303 - -
Bva08g00612 303 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 303 IPR027725 -
Bva08g00612 303 MobiDBLite consensus disorder prediction 107 147 - -
Bva08g00612 303 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g00612 303 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g00612 303 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g00612 303 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Bva08g00612 303 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g00612 303 Coils Coil 146 180 - -
Bva08g00612 303 Gene3D - 147 189 - -
Bva08g00612 303 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g00612 303 MobiDBLite consensus disorder prediction 252 288 - -
Bva08g00612 303 MobiDBLite consensus disorder prediction 252 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00612 Bva-Chr8 3172506 3175160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00612 2 303 HSF AT4G36990 51.645 1.57e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva08g00612 HSF_DNA-bind 4.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00612 K09419 - vvi:100247320 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00612 08 3172506 3175160 Bva11g01710 11 15422079 15424498 BWGD
Bva08g00612 08 3172506 3175160 Bva08g00612 08 3172506 3175160 ECH