Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00607 ATGGTGCGGCAGTATGCGAGTTTCAGAACGAGAAGGTCCCAAGCGGCACGAGCGAGAGAGGTAGAATCAGAGAGATATAGAGAGGGAGATCTGCGTTCTAAGGTTTTGATAATCTCAGAGATCCGAAGGGGGCGACTGTCGATTCCCGTCGATTGCCACTTAACAAAGTATCTTATGGAGCAGAGAAAGCTCGTGGTTTTGGGTGTTCCTTGGGAAGTCGATACCGAGGGTTTGAGAGAATATATGAGCAAATTTGGCGAATTGGAAGATTGTATTGTCATGAAGgaGCGGTCAACTGGCCGATCTCGTGGTTTTGGATATGTTACATTTGCGTCCGTTGATGATGCTCAGAATGCATTATCAAGTGAGCACGTTCTTGGCAATAGGATGCTGGAAGTCAAAGTGGCCACCCCAAAGgagGAGATGAGGGCGCCTGTCAAGAAGGTTACCAGAATTTTTGTGGCTAGAATTCCACCATCTGTAACTGAAGCAACTTTTAGAAGTCATTTTGAGAAATACGGTGACATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAAATGCATCGTGGAATTGGTTTCATCACTTATGCAAGTGCAGAATCTGTAGAGAATTTGATGACAGAAACTCATGAACTGGGAGGTTCTACTGTAGTGGTTGATCGAGCAACGCCTAAGGAAGATGACTTTAAGCCGATTGGGAGAATGCAACAGGGAGGATATGGTGCATACAATGCTTATATTTCTGCGGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCTCAGTCTATGGAAGGGGAGAACCTGCTCGCGGAATGGGCAAAAAGATTTTTGTTGGTCGTCTTCCCCCAGAAGCTACAGTTGAGGATCTTCGTCAGTATTTTGGCAGATTTGGCCGTATTTTAGATGTTTATGTTCCCAGGGATCCTAAGAGAACAGGCCATAgaggttttggttttgtaacTTTTGCAGAAGATGGTGTCGCAGATCGTGTCTCCCGAAGGTCTCATGAGATTTGTGGACATCAGGTGGCGATAGATTCAGCCACACCTCTTGATGATGCTGGGCCGAGTAGAAATTTTATGATGAATCCAGTAGATTCATTTCCGGGGTATGGTGGTCCAATGCGTACATATGGGAGGATGTACGGCAGCCTGGACTTCGATGATTGGGGTTATGGAATTAGCAGTGGGAGGCCCTCGAGAGCTGATTGGAGGTATAGGCCTTACTA 1253 0.4525 MVRQYASFRTRRSQAARAREVESERYREGDLRSKVLIISEIRRGRLSIPVDCHLTKYLMEQRKLVVLGVPWEVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAQNALSSEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITYASAESVENLMTETHELGGSTVVVDRATPKEDDFKPIGRMQQGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGEPARGMGKKIFVGRLPPEATVEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDDAGPSRNFMMNPVDSFPGYGGPMRTYGRMYGSLDFDDWGYGISSGRPSRADWRYRPY 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00607 417 Gene3D - 280 362 IPR012677 -
Bva08g00607 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 138 IPR000504 GO:0003723
Bva08g00607 417 SUPERFAMILY RNA-binding domain, RBD 146 245 IPR035979 GO:0003676
Bva08g00607 417 PANTHER OS01G0945800 PROTEIN 61 417 - -
Bva08g00607 417 SUPERFAMILY RNA-binding domain, RBD 60 143 IPR035979 GO:0003676
Bva08g00607 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 209 IPR000504 GO:0003723
Bva08g00607 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 338 IPR000504 GO:0003723
Bva08g00607 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 123 IPR000504 GO:0003723
Bva08g00607 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 358 IPR000504 GO:0003723
Bva08g00607 417 Gene3D - 144 251 IPR012677 -
Bva08g00607 417 Gene3D - 55 143 IPR012677 -
Bva08g00607 417 SUPERFAMILY RNA-binding domain, RBD 282 381 IPR035979 GO:0003676
Bva08g00607 417 SMART rrm1_1 151 222 IPR000504 GO:0003723
Bva08g00607 417 SMART rrm1_1 283 354 IPR000504 GO:0003723
Bva08g00607 417 SMART rrm1_1 63 134 IPR000504 GO:0003723
Bva08g00607 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 226 IPR000504 GO:0003723
Bva08g00607 417 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 61 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00607 Bva-Chr8 3139540 3144356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00607 63 351 Eukaryotic Initiation Factors Gene Family AT2G23350 26.421 3.40e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00607 K14411 - zju:107424774 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00607 08 3139540 3144356 Bva08g00607 08 3139540 3144356 ECH