Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00604 ATGGATGGGGACATAGTTAAAACTTCTTCAGCAGGGGACAGCAGCCTGGACACGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTCTGCGAACCATTTTATAACACTCCCACTTTCCCGGAAACCGATTTCTTGGATAACGGAAGTGGAATTTCCACCAGCATTACTACCGGTCTGCCCATATTCCCACACCAAACTTCGAATAATCCTTCAATACCATATTCTGCTAATTTCGTTAACAATCCGATCCAGCCGCCTACAACACCTCCGCTTACACCCAATGAAGTTCCACTGAGACTCAAGAATCCCAACAGTTCATTTCTCTATCCATCATCATCGTCGtcagagaagagaaattcTATGGCAGCCATGAGAGAAATGATTTTCAGAATAGCAGTGATGCAACCGATTCATATTGACCCAGAATCTATAAAGCCACCGAAGCGACGAAATGTGAAGATCTCAAAGGATCCACAGAGTGTTGCGGCGAGACACAGAAGGGAAAGGATAAGCGAGAGGATAAGGATTCTGCAGAGACTAGTACCTGGTGGAACGAAAATGGACACGGCATCCATGTTAGACGAAGCAATACATTACGTGAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGGGCTAATAGGCCCATAAGTGTTGGTTTCCCGGCAATGTTGACCAACGTTAACGCCAACGTGAATTATGCTGCCGCTTTAGTGAAGGGTTTCCAACCTTCTCATAAAATGCTCAGCTG 764 0.4437 MDGDIVKTSSAGDSSLDTMAMMMQMEKFPEFCEPFYNTPTFPETDFLDNGSGISTSITTGLPIFPHQTSNNPSIPYSANFVNNPIQPPTTPPLTPNEVPLRLKNPNSSFLYPSSSSSEKRNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRPISVGFPAMLTNVNANVNYAAALVKGFQPSHKMLS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00604 254 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 250 IPR045843 GO:0003700|GO:0006355
Bva08g00604 254 PANTHER TRANSCRIPTION FACTOR HEC2 1 250 - -
Bva08g00604 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Bva08g00604 254 Pfam Helix-loop-helix DNA-binding domain 166 205 IPR011598 GO:0046983
Bva08g00604 254 SMART finulus 162 211 IPR011598 GO:0046983
Bva08g00604 254 Coils Coil 195 215 - -
Bva08g00604 254 CDD bHLH_AtIND_like 157 213 - -
Bva08g00604 254 Gene3D - 155 220 IPR036638 GO:0046983
Bva08g00604 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 215 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00604 Bva-Chr8 3126432 3127196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00604 25 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 57.071 9.03e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g00604 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00604 - - gmx:100796649 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00604 08 3126432 3127196 Bva08g00604 08 3126432 3127196 ECH