Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00602 ATGGACTGGCTACGAGGAGACTCAGTTGGAAGGGGAAGCTTTGCCACCGTCAATTTAGCCGTTTGCTCTCAGTTTACTTCTCCCACGGTCGTTAAGTCCTCTGATGTTTTCAGCTGTTCTACGCTCAAGAACGAGAAACAAGTATTGGATTGTCTTGGATTTTGCCCGGAAATCATCAGGTACTTTGGCGATGATTATACCACTGAAAACGGAGAGGATttctataatttgtttttggaatATGCTAGCGGTGGTAGTCTATTTGATCAGCTAAAGAATCACGGTGGTAGGTTGCCGGAATATGACGTTCGGCGATACACGAGATCCATCGTCAGAGGACTCGCTTATATTCACAACAAAGGGTTCGTCCACTGCGACATAAAGCTTCAAAATATTCTTGTGTTGGGCAATGGGGACGTCAAAATTGCAGACTTTGGGCTTGCCAAGAAAACAGGGGAAAAGCAGAGCAAGTGCGAATGGAGGGGAACTCCTCTGTCAATGTCACCGGAATCAGTAAACGACAACGAATATGAATCTCCAGCAGACGTGTGGGCTCTCGGCTGCGCAGTGGTAGAGATGGTGACGGGGAAACCCGCTTGGAATGTCGAAAAAGGCTCGAATGTTTTCTCCTTAATGCTTCGGATTGGAGTCGGAGACGAATTGCCGGAAGTTCCTGATGAATTGTCAGAAGAAGGGAAGGACTTTCTATCAAAGTGTTTCGCAAAGGATCCCCGAAAAAGATGGACGGCGGAGATGCTTCTCAAGCATTCCTTTGTCGCGGATGACACTCTTTCCTCAAAGACATCATCGCCGAGGTGCCACTTCGATTTCCCAGATTGGGCTTCGATGGCAACATCGTCTGTTCCCTGCTCGCCGGAATCAGAGCAATGGTCAGAATGGAAATTCGATTCCACGAATTTGTCAAGTTGCCGTTCACCGGTGGATCGCCTCCGGCAGCTAGTGACGGATGAGAAAGCCAATTGGTTAGATTCGGACAGTTGGAACAGCGTGAGGTG 1016 0.4764 MDWLRGDSVGRGSFATVNLAVCSQFTSPTVVKSSDVFSCSTLKNEKQVLDCLGFCPEIIRYFGDDYTTENGEDFYNLFLEYASGGSLFDQLKNHGGRLPEYDVRRYTRSIVRGLAYIHNKGFVHCDIKLQNILVLGNGDVKIADFGLAKKTGEKQSKCEWRGTPLSMSPESVNDNEYESPADVWALGCAVVEMVTGKPAWNVEKGSNVFSLMLRIGVGDELPEVPDELSEEGKDFLSKCFAKDPRKRWTAEMLLKHSFVADDTLSSKTSSPRCHFDFPDWASMATSSVPCSPESEQWSEWKFDSTNLSSCRSPVDRLRQLVTDEKANWLDSDSWNSVR 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00602 338 SMART serkin_6 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g00602 338 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g00602 338 Gene3D Transferase(Phosphotransferase) domain 1 89 299 - -
Bva08g00602 338 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 318 - -
Bva08g00602 338 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Bva08g00602 338 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 318 - -
Bva08g00602 338 CDD STKc_MAPKKK 2 259 - -
Bva08g00602 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Bva08g00602 338 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Bva08g00602 338 ProSiteProfiles Protein kinase domain profile. 3 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g00602 338 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00602 Bva-Chr8 3114605 3115910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00602 1 338 MAP Kinase Kinase Kinase AT5G67080 51.099 5.91e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Bva08g00602 Pkinase 2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00602 - - aprc:113858661 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00602 08 3114605 3115910 Bva11g01719 11 15475930 15477184 BWGD
Bva08g00602 08 3114605 3115910 Bva08g00602 08 3114605 3115910 ECH