Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva08g00596 | atgcaGGCCTGCAAAGTACCGAGCAGCATGTGGTCCAAAATAGGTCGCCTCAAGCGTTCTGTGATGCCTAAGCTCGCTAGGGGCAGCACTATTTTTGGCTCTGGAGCAAGTCCTGGGATCATGTCTTGTATTGCCGGTTTTCTTCTTTGCGATGCATACTTGTGTTCCCGTGACCTATTAAAGGAGCTGAACAAAGTTCGTAAGGAAGTTGGGCCGCATGATGttccaaaaaaattccaaTCGGCAGAATCTCTTCAGGAACTTATTGAATATGACGAGACAGATGCGTGGTTGTCAATGGACCTCATGTTTCATTTGAGGGTTCTTCCACTTACACGTCAGCTGACTAATATTAGTGGTAACCTCTGGGGAAAAACTCTTCAGAACAACTGGAGTGTTGCCAGAGTTGCTGAAAATCTGGTTCAAAGGAGGAGAATGGTAAAGTCATGGATGAAAAATGCATCTGGTCTTAAAGTTCAGCAGCTGGACATTCAACAGCAAGCACTAAAGCTTACTGCAAACAGGTTTGTGTCATTATTGTTCCTTCAGTTTACTTGCTGCGAATGTGTGATATATGGTGACACTGATTCGATAATGATTTACAGCGGGCTAGATGACATCGCGAAAGCAAAAGCTATGGCTGGAAAAGTTATTCAGGAGgtcaacaaaaaatataggTGCTTGAAAATTGATCTGGATGGTTTATACAAGAGAATGCTACttctgaagaaaaagaaatatgccaGCTATCAAGGTGCAGTTCAAAGATGGGACTCCGTTGTTAAACGCAAAGGTCTTGATATTGTTCGTCGTGACTGGAGCTTATTGTCTAAAGAACAAGGAGACTTCTGCCTACGTCAAATTTTGTCTGGAGGCTCTCTCATGAAGGTTCAAGAGGAAATGAGGAGCGGACAAGTATCactggaaaaatatatcatcaCTAAGACATTGACTAAACCCCCCGATGCATATCCAGATGCGAAAAACCAACTACATGTTCTCGGAATCAAGCGATGCGGGTG | 1022 | 0.408 | MQACKVPSSMWSKIGRLKRSVMPKLARGSTIFGSGASPGIMSCIAGFLLCDAYLCSRDLLKEIEYDETDAWLSMDLMFHLRVLPLTRQLTNISGNLWGKTLQNNWSVARVAENLVQRRRMVKSWMKNASGLKVQQLDIQQQALKLTANRFVSLLFLQFTCCECVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLKIDLDGLYKRMLLLKKKKYASYQGAVQRWDSVVKRKGLDIVRRDWSLLSKEQGDFCLRQILSGGSLMKVQEEMRSGQVSLEKYIITKTLTKPPDAYPDAKNQLHVLGIKRCG | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva08g00596 | 314 | Gene3D | Palm domain of DNA polymerase | 136 | 239 | IPR023211 | - | |
Bva08g00596 | 314 | Pfam | DNA polymerase family B | 164 | 307 | IPR006134 | GO:0000166|GO:0003677 | |
Bva08g00596 | 314 | Pfam | DNA polymerase family B | 108 | 149 | IPR006134 | GO:0000166|GO:0003677 | |
Bva08g00596 | 314 | Gene3D | - | 1 | 62 | IPR036397 | GO:0003676 | |
Bva08g00596 | 314 | Gene3D | - | 63 | 118 | IPR036397 | GO:0003676 | |
Bva08g00596 | 314 | Gene3D | - | 240 | 313 | IPR042087 | - | |
Bva08g00596 | 314 | SUPERFAMILY | Ribonuclease H-like | 9 | 105 | IPR012337 | - | |
Bva08g00596 | 314 | SUPERFAMILY | DNA/RNA polymerases | 105 | 313 | IPR043502 | - | |
Bva08g00596 | 314 | ProSitePatterns | DNA polymerase family B signature. | 166 | 174 | IPR017964 | GO:0000166|GO:0003676 | |
Bva08g00596 | 314 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 164 | 307 | - | - | |
Bva08g00596 | 314 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 1 | 66 | - | - | |
Bva08g00596 | 314 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 110 | 150 | - | - | |
Bva08g00596 | 314 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 59 | 104 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva08g00596 | Bva-Chr8 | 3091536 | 3097089 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva08g00596 | 107 | 307 | Core DNA Replication Machinery Family | AT5G67100 | 53.086 | 1.28e-67 | 227 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva08g00596 | K02320 | - | jre:109009092 | 269.24 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva08g00596 | 08 | 3091536 | 3097089 | Bva08g00596 | 08 | 3091536 | 3097089 | ECH |