Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00596 atgcaGGCCTGCAAAGTACCGAGCAGCATGTGGTCCAAAATAGGTCGCCTCAAGCGTTCTGTGATGCCTAAGCTCGCTAGGGGCAGCACTATTTTTGGCTCTGGAGCAAGTCCTGGGATCATGTCTTGTATTGCCGGTTTTCTTCTTTGCGATGCATACTTGTGTTCCCGTGACCTATTAAAGGAGCTGAACAAAGTTCGTAAGGAAGTTGGGCCGCATGATGttccaaaaaaattccaaTCGGCAGAATCTCTTCAGGAACTTATTGAATATGACGAGACAGATGCGTGGTTGTCAATGGACCTCATGTTTCATTTGAGGGTTCTTCCACTTACACGTCAGCTGACTAATATTAGTGGTAACCTCTGGGGAAAAACTCTTCAGAACAACTGGAGTGTTGCCAGAGTTGCTGAAAATCTGGTTCAAAGGAGGAGAATGGTAAAGTCATGGATGAAAAATGCATCTGGTCTTAAAGTTCAGCAGCTGGACATTCAACAGCAAGCACTAAAGCTTACTGCAAACAGGTTTGTGTCATTATTGTTCCTTCAGTTTACTTGCTGCGAATGTGTGATATATGGTGACACTGATTCGATAATGATTTACAGCGGGCTAGATGACATCGCGAAAGCAAAAGCTATGGCTGGAAAAGTTATTCAGGAGgtcaacaaaaaatataggTGCTTGAAAATTGATCTGGATGGTTTATACAAGAGAATGCTACttctgaagaaaaagaaatatgccaGCTATCAAGGTGCAGTTCAAAGATGGGACTCCGTTGTTAAACGCAAAGGTCTTGATATTGTTCGTCGTGACTGGAGCTTATTGTCTAAAGAACAAGGAGACTTCTGCCTACGTCAAATTTTGTCTGGAGGCTCTCTCATGAAGGTTCAAGAGGAAATGAGGAGCGGACAAGTATCactggaaaaatatatcatcaCTAAGACATTGACTAAACCCCCCGATGCATATCCAGATGCGAAAAACCAACTACATGTTCTCGGAATCAAGCGATGCGGGTG 1022 0.408 MQACKVPSSMWSKIGRLKRSVMPKLARGSTIFGSGASPGIMSCIAGFLLCDAYLCSRDLLKEIEYDETDAWLSMDLMFHLRVLPLTRQLTNISGNLWGKTLQNNWSVARVAENLVQRRRMVKSWMKNASGLKVQQLDIQQQALKLTANRFVSLLFLQFTCCECVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLKIDLDGLYKRMLLLKKKKYASYQGAVQRWDSVVKRKGLDIVRRDWSLLSKEQGDFCLRQILSGGSLMKVQEEMRSGQVSLEKYIITKTLTKPPDAYPDAKNQLHVLGIKRCG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00596 314 Gene3D Palm domain of DNA polymerase 136 239 IPR023211 -
Bva08g00596 314 Pfam DNA polymerase family B 164 307 IPR006134 GO:0000166|GO:0003677
Bva08g00596 314 Pfam DNA polymerase family B 108 149 IPR006134 GO:0000166|GO:0003677
Bva08g00596 314 Gene3D - 1 62 IPR036397 GO:0003676
Bva08g00596 314 Gene3D - 63 118 IPR036397 GO:0003676
Bva08g00596 314 Gene3D - 240 313 IPR042087 -
Bva08g00596 314 SUPERFAMILY Ribonuclease H-like 9 105 IPR012337 -
Bva08g00596 314 SUPERFAMILY DNA/RNA polymerases 105 313 IPR043502 -
Bva08g00596 314 ProSitePatterns DNA polymerase family B signature. 166 174 IPR017964 GO:0000166|GO:0003676
Bva08g00596 314 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 164 307 - -
Bva08g00596 314 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1 66 - -
Bva08g00596 314 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 110 150 - -
Bva08g00596 314 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 59 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00596 Bva-Chr8 3091536 3097089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00596 107 307 Core DNA Replication Machinery Family AT5G67100 53.086 1.28e-67 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00596 K02320 - jre:109009092 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00596 08 3091536 3097089 Bva08g00596 08 3091536 3097089 ECH