Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00593 ATGGGGGATATGTACGACTATGATAAAAATACGTGTTCGTCTTCAACTTCTGCTGCTCCTCCATCGTCTTCGTCCCAAGACGACATATCGCTTTTTCTGAATCAAATTCTCATTCGTTCATCATCACCAGCTCATGTGGGTAAAAACGCACAGAGCCTCATGTCGTCCACAACCATTGCTGGACTCTGCAACAAGAACGCTACGCTAGGAAATGCACAATCTTCATATCGATCATCACTGCCTGGAGATGGGATCTTCGCCGTTGATTCCATCGCTCGGCCTGGGGTAAACACTTCAAGCGGTGTCCTACTCTCTTCTTCGGGTATTTATAGTTCGGCCAATATAAAGGGCAGTTCAGCTGCAAATGTATCTTCATCGTCGGTTGGAGTGAGTGAGAATGAGACCGACGAGTATGATTGTGAAAGTGAGGAGGGTATTGATGCATTGGCGGATGAGGTGCTGACAAAGTCTGTTCCTCCACGGAGTTCGTCTAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAaaagAGGAGAAGGAGTAGGATCAATGAGAAAATGAAGGCACTGCAAAATCTAATTCCAAATTCTAACAAGACGGATAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTCGCTATGAGAAATGGATCGAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAGTTGTCCCGAATGAGGATGGAGTTTGATGAAGAAAACAGGTCTACGCCTTTAAACATGGCAGCTACTCTGCCTTTGCACTATGGACGCGGTCTACCTAACAAACGCACTGTTGCAGACCAACCATCAGTGCTATCTCCATCGTATATAATGAACTCTGAAGCCTCTTTTGGCTCAGAACCCCCATTTCTAGGACATCTAGGGCCCTTTCATCTGAAAAGACCTTCAGAGgaGATATGTAGAGAAGATATATTGCAGCATCAGCAATTAAATGCAAACCATTCAGATAACAATCTATCAGGTGTTTCCCAAGgaTTTGAGTCTGGCTCGTTGGCTACAGTATCAGTCTCATTTGATATGCAACCATACGAACTGAGGGACAACGTTTCTTTGGAGACCTGCATCTCAGGAAGAGATCAATCAGGAGCTGTTCTGAGAAATATTGAGCACaaccatttattttcttcacagTTAAGTAGATTGCAGATGGGAGAAATTGCCTGCAACGACAACTTCAAGACAGAAAAACCagattttttatgtttgcCATG 1283 0.431 MGDMYDYDKNTCSSSTSAAPPSSSSQDDISLFLNQILIRSSSPAHVGKNAQSLMSSTTIAGLCNKNATLGNAQSSYRSSLPGDGIFAVDSIARPGVNTSSGVLLSSSGIYSSANIKGSSAANVSSSSVGVSENETDEYDCESEEGIDALADEVLTKSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLAMRNGSSLHPMCFPEGLQPLQLSRMRMEFDEENRSTPLNMAATLPLHYGRGLPNKRTVADQPSVLSPSYIMNSEASFGSEPPFLGHLGPFHLKRPSEEICREDILQHQQLNANHSDNNLSGVSQGFESGSLATVSVSFDMQPYELRDNVSLETCISGRDQSGAVLRNIEHNHLFSSQLQMGEIACNDNFKTEKPDFLCLP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00593 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Bva08g00593 424 Gene3D - 163 227 IPR036638 GO:0046983
Bva08g00593 424 MobiDBLite consensus disorder prediction 156 180 - -
Bva08g00593 424 SMART finulus 174 223 IPR011598 GO:0046983
Bva08g00593 424 MobiDBLite consensus disorder prediction 119 133 - -
Bva08g00593 424 MobiDBLite consensus disorder prediction 119 138 - -
Bva08g00593 424 PANTHER TRANSCRIPTION FACTOR SPATULA 22 342 - -
Bva08g00593 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 228 IPR036638 GO:0046983
Bva08g00593 424 Pfam Helix-loop-helix DNA-binding domain 172 218 IPR011598 GO:0046983
Bva08g00593 424 MobiDBLite consensus disorder prediction 1 26 - -
Bva08g00593 424 MobiDBLite consensus disorder prediction 8 26 - -
Bva08g00593 424 MobiDBLite consensus disorder prediction 166 180 - -
Bva08g00593 424 CDD bHLH_AtPIF_like 168 229 - -
Bva08g00593 424 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 22 342 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00593 Bva-Chr8 3076016 3079601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00593 133 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.612 7.60e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g00593 HLH 5.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00593 - - gmx:100793754 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00593 08 3076016 3079601 Bva11g01725 11 15510395 15513421 BWGD
Bva08g00593 08 3076016 3079601 Bva08g00593 08 3076016 3079601 ECH