Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00587 atgtgGGATCTCAATGACTCGCCCGATCAGAGAAAAGACGAGGAATCCGAAGGCTGTTCATCGTTGAAGACCTCCATCGATGGAGATGATGATAAAGGTAAGCAGGTTGGATCTGTTTCCAATTCGAGCTCTTCAGCAGTTGTAGTCGAGGACGGATCGGACGAAGAAGAAGCTGAGAGGGGCGGAAGCAGAACATTCAAGAAAAGACGCAGTAAGATATTCGGGTTTTCCGTGACCCACGACGAGTCCATGGACACCGACCCGCCCGTCACCCGACAGTTTTTTCCGGTGGAGGGGCCTGACGTGGCAGTGACTTCGGGCGTTGCTTGTGGCAGCTCCGCCTTTCCTCGAGCTCACTGGGTTGGTGTCAAATTCTGCCAATCAGAAGCACTTGCTGCCGGAAAATCTGCGGAGGTTTCGCAGCCCATGAAGAAGAGCCGGCGTGGGCCCAGGTCAAGGAGCTCCCAGTACCGAGGTGTTACCTTTTACAGAAGAACCGGTCGATGGGAGTCTCACATATGGGATTGTGGAAAACAAGTCTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATCAAGTTCCGGGGAGTAGAGGCAGACATAAACTTTAACATAGAAGACTATGAAGAAGACTTGAAGCAGATGAGTAATCTAACCAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACCGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATCTGGGTTTGTTTGACACTGAGATTGAGGCTGCAAGGGCTTATGATAAGGCAGCAATAAAATGCAATGGCAAAGATGCTGTCACCAATTTTGATCCCAGCAGCTATGAGAATGAGCTTAATTCTGAATCATCAGGTAATGCTGCAGAACACAACCTGGACTTAAGTTTGGGGAATTCAAGTTCGAAGCACAGCAATCATCTAGCATTAGGGAATGATAATAATACCCCTAATGCTGTCATGGATCAACATAATGGGGGTTTCAGGCCTAAGGTtcatatgaAGCTGCTACAAGAACCATGTAGTGCTAGAAGCAACGTGGAAGCTCATGGAAGAGATGGGTATGGAGAGAATGAAGCCTTGAGGCTGCTGAGTCAAACTCACATTCAATCTGCAGCTTCTAGTGAAATGCAAAGATATGGTCCCTATAGAGCCACTGGGGAGCCCCAAATGCTTCACAATTTTGCACCACAGCTTCACTCACCAAATCTTCATTTTCCTAGCAGCAGCAATGGAGGTCGTGTGGGGAGTGATCTTTCACTGTCAATGAACGATCATCAACAGCAACAACAGTGGCAATCTGGGCCTCCTCCTCATTTTTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATAATAAGACCTTCCCAAGTTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATA 1523 0.4773 MWDLNDSPDQRKDEESEGCSSLKTSIDGDDDKGKQVGSVSNSSSSAVVVEDGSDEEEAERGGSRTFKKRRSKIFGFSVTHDESMDTDPPVTRQFFPVEGPDVAVTSGVACGSSAFPRAHWVGVKFCQSEALAAGKSAEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSSYENELNSESSGNAAEHNLDLSLGNSSSKHSNHLALGNDNNTPNAVMDQHNGGFRPKMKLLQEPCSARSNVEAHGRDGYGENEALRLLSQTHIQSAASSEMQRYGPYRATGEPQMLHNFAPQLHSPNLHFPSSSNGGRVGSDLSLSMNDHQQQQQWQSGPPPHFLATAAASSGFPPQIIRPSQVWLQKNGFHTLMRPS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00587 505 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Bva08g00587 505 MobiDBLite consensus disorder prediction 433 468 - -
Bva08g00587 505 CDD AP2 156 213 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 MobiDBLite consensus disorder prediction 306 349 - -
Bva08g00587 505 MobiDBLite consensus disorder prediction 1 65 - -
Bva08g00587 505 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 MobiDBLite consensus disorder prediction 35 49 - -
Bva08g00587 505 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
Bva08g00587 505 Gene3D AP2/ERF domain 247 306 IPR036955 GO:0003700|GO:0006355
Bva08g00587 505 MobiDBLite consensus disorder prediction 136 156 - -
Bva08g00587 505 MobiDBLite consensus disorder prediction 433 470 - -
Bva08g00587 505 Pfam AP2 domain 247 296 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Bva08g00587 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 503 - -
Bva08g00587 505 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 503 - -
Bva08g00587 505 SUPERFAMILY DNA-binding domain 247 306 IPR016177 GO:0003677
Bva08g00587 505 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00587 Bva-Chr8 3029464 3033085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00587 1 337 AP2-EREBP Transcription Factor Family AT4G36920 69.492 1.96e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Bva08g00587 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00587 K09284 - gmx:100792442 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00587 08 3029464 3033085 Bva11g01731 11 15549319 15552872 BWGD
Bva08g00587 08 3029464 3033085 Bva08g00587 08 3029464 3033085 ECH