Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00558 ATGACGATCTGCaggaaagaagaaggaggTGATATATCATCAAAGAACACTGAAAGTTTGGCTGAAGAGTATAACACAAGGGAATGGTTGAGTTTAGGGCTCCACGGAGACATGCCTGTTGCAGTTGAAAGTCCAGAGTCCCCATCGAAACCTCTCAACAATAAGGTATTCTCTTGCAATTTCTGCATGAGAAAGTTTTATAGCTCACAAGCCTTGGGTGGTCACCAGAATGCCCACAAGAGGGAAAGAGGAGCAGCTAAAAGGTACCAACCCCATAGGATGATGATCATGACATCAACGGGGTTTCCTTACACATCTCTGGCGGCGAAGTCATTGGGTGTGCAGCCTCACTCGCTAGTGCACAAGCTAACCAGAGAAGGCTCTGCTACGGTTGCTAGATTTGGTGATTCCAATTCTGGGTTTGGATTGGGTTGGACACCAATTATGCTAGAACAATCCATGGGTTTGATTTGGCCAGGGAGCTTTCCGGCGGAAAACTTACAAAGGCAAGAATTGGATGTAAATAATCTCGATTTGGATCTTCGGTTGTG 551 0.4446 MTICRKEEGGDISSKNTESLAEEYNTREWLSLGLHGDMPVAVESPESPSKPLNNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAKRYQPHRMMIMTSTGFPYTSLAAKSLGVQPHSLVHKLTREGSATVARFGDSNSGFGLGWTPIMLEQSMGLIWPGSFPAENLQRQELDVNNLDLDLRL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00558 183 PANTHER ZINC FINGER PROTEIN 4-LIKE 13 183 - -
Bva08g00558 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Bva08g00558 183 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Bva08g00558 183 PANTHER ZINC FINGER PROTEIN 4-LIKE 13 183 - -
Bva08g00558 183 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Bva08g00558 183 Gene3D Classic Zinc Finger 42 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00558 Bva-Chr8 2868784 2869915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00558 9 162 C2H2 Transcription Factor Family AT1G24625 39.241 8.39e-23 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00558 - - tcc:18611223 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00558 08 2868784 2869915 Bva11g01764 11 15727139 15728158 ECH
Bva08g00558 08 2868784 2869915 Bva08g00558 08 2868784 2869915 ECH