Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00534 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAGGGTTGCAGCGAGTCCTGTATTCTTCGCCCTTGTTTGCAGTGGATCGAGAGCCCTGAAGCTCAAGGCCATGCCACCGTCTTTGTAGCCAAGTTTTTTGGCCGTGCTGGTCTCATGTCTTTCATTTCCAACGTCCCTGAAAATCAAAGACCTGCTCTTTTCCAGTCTTTGTTGTTCGAAGCATGTGGGCGAACGGTGAACCCCGTGAATGGTGCTGTGGGGCTTCTATGGACGGGAAACTGGCACGTGTGCCAAGCTGCCGTGGAGACGGTGCTCCGCGGTGGCACTTTAAGACCCATGCCAGAGCTTCTTGGCCTAGATGCTCCTACTCCGGACACCGATGAAGCGTCCGAAGAGGAGGTTACCTGCACGAACATGTGGAGGGTCCGAGATCCGAACCCGAGCCCCCGTTTAACGAACTCCCGATCTAATAATAAGGTGTCTTCTGGCAAACGCCGTCGATCCGATGAGTGTGCGAAGCTCCAAAGCACCGATCTCGATCTCCAATTGACGCCACTTTTCCTGCAGAAAGTTTCGAGCTACGGCTGCAGACCGGAAATTCCCCGGCCGGGTACGCCGTCGATGAACTCGGAGGAATCCGTCATGACGACGGATAGTGGCCTCAAAGATCAGTATGCTAATGGAGGAGACCGGAAACTTCTCAACCTTTTCAATTG 707 0.5375 MSCNGCRVLRKGCSESCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELLGLDAPTPDTDEASEEEVTCTNMWRVRDPNPSPRLTNSRSNNKVSSGKRRRSDECAKLQSTDLDLQLTPLFLQKVSSYGCRPEIPRPGTPSMNSEESVMTTDSGLKDQYANGGDRKLLNLFN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00534 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Bva08g00534 235 MobiDBLite consensus disorder prediction 137 167 - -
Bva08g00534 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 234 - -
Bva08g00534 235 MobiDBLite consensus disorder prediction 203 220 - -
Bva08g00534 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 234 - -
Bva08g00534 235 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Bva08g00534 235 MobiDBLite consensus disorder prediction 192 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00534 Bva-Chr8 2747519 2748830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00534 1 234 AS2 family AT3G49940 57.692 3.33e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva08g00534 LOB 3.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00534 - - gmx:100802764 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00534 08 2747519 2748830 Bva13g00376 13 1746990 1747662 BWGD
Bva11g01793 11 15883429 15884687 Bva08g00534 08 2747519 2748830 BWGD
Bva08g00534 08 2747519 2748830 Bva11g01793 11 15883429 15884687 ECH
Bva10g00654 10 5631738 5632725 Bva08g00534 08 2747519 2748830 ECH
Bva08g00534 08 2747519 2748830 Bva08g00534 08 2747519 2748830 ECH